CF504582

Overview
NameCF504582
Unique NameCF504582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFA (Acetylornithine aminotransferase OS=Xylella fastidiosa GN=argD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTG 308
            +GR+YLDL++GIAV  LGH D D + A+V+QA  L H SN++YS P + LA+ LV  S FA+RVF  ++G
Sbjct:   38 QGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRLWHTSNVFYSEPSLRLAQELVDVSRFAERVFLCSSG 107
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_BIFLO (Acetylornithine aminotransferase OS=Bifidobacterium longum GN=argD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTG 308
            +G EYLD  +GIAVN+LG+    W+KAV DQA  + H+SN + S PQIELA +LV  + A    +V+F N+G
Sbjct:   47 DGNEYLDFLAGIAVNSLGYAHPKWVKAVADQAAKVAHISNYFASEPQIELASKLVKLAGAPEGSKVYFGNSG 118
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD1_PSESM (Acetylornithine aminotransferase 1 OS=Pseudomonas syringae pv. tomato GN=argD1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            GRE +D S GIAVN LGH     + A+ +QAN L HVSN++ + P + LAK+LV  +FA+RVFF N+G
Sbjct:   41 GRELVDFSGGIAVNVLGHCHPALVGALTEQANNLWHVSNVFTNEPTLRLAKKLVDSTFAERVFFCNSG 108
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_ANASP (Acetylornithine aminotransferase OS=Anabaena sp. (strain PCC 7120) GN=argD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.527e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EYLD  +GIA   LGH     ++AV  Q   L HVSN+YY   Q ELA+ ++  S ADRVFF N+G
Sbjct:   56 QGKEYLDFVAGIATCTLGHAHPAMVEAVTRQIQKLHHVSNLYYIPEQGELAQWIIQHSCADRVFFCNSG 124

HSP 2 Score: 26.9498 bits (58), Expect = 7.527e-13
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++ TY R P+ L  G GC+++D
Sbjct:   33 VMSTYGRFPLALERGAGCRVWD 54
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAP (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=argD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.791e-13
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D S GIAV +LGH      K +  Q+  L H+SN++ + P + LA +L++ SFA RVFF+N+G
Sbjct:   40 KGKEYIDFSGGIAVTSLGHCHPVLNKVLRQQSKKLWHISNIFTNEPALRLADKLISSSFASRVFFANSG 108

HSP 2 Score: 26.1794 bits (56), Expect = 9.791e-13
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 
Query:   23 NKLLVGTYNRAPVVLASGKGCKLYD 97
            NKL++  YN A  +   GKG +L+D
Sbjct:   14 NKLILPVYNPAFFIPVKGKGSRLWD 38
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_CAUCR (Acetylornithine aminotransferase OS=Caulobacter crescentus GN=argD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.791e-13
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            EG EYLD  +GIA N LGH     ++ +  QA  L HVSN+Y    Q ELA  L A SFAD VFF+N+G
Sbjct:   37 EGEEYLDCVAGIATNGLGHAHPALVEVLKAQAEKLWHVSNIYRIPEQEELADALCANSFADVVFFTNSG 105

HSP 2 Score: 26.5646 bits (57), Expect = 9.791e-13
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKL 91
            ++G YNRAP+    G+G +L
Sbjct:   14 IMGVYNRAPLAFERGRGARL 33
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SHISS (Succinylornithine transaminase OS=Shigella sonnei (strain Ss046) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SHIBS (Succinylornithine transaminase OS=Shigella boydii serotype 4 (strain Sb227) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SHIB3 (Succinylornithine transaminase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SALTY (Succinylornithine transaminase OS=Salmonella typhimurium GN=astC PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH      +A+ +QAN   H+ N Y + P + LAK+L+  +FA+RVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPALREALNEQANRFWHIGNGYTNEPALRLAKKLIDATFAERVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            +V  Y  AP +   G+G +L+D
Sbjct:   14 MVPVYVPAPFIPVRGEGSRLWD 35
The following BLAST results are available for this feature:
BLAST of CF504582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ARGD_XYLFA6.106e-1352.86Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_BIFLO6.106e-1350.00Acetylornithine aminotransferase OS=Bifidobacteriu... [more]
ARGD1_PSESM6.106e-1352.94Acetylornithine aminotransferase 1 OS=Pseudomonas ... [more]
ARGD_ANASP7.527e-1349.28Acetylornithine aminotransferase OS=Anabaena sp. (... [more]
ARGD_BUCAP9.791e-1344.93Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_CAUCR9.791e-1352.17Acetylornithine aminotransferase OS=Caulobacter cr... [more]
ASTC_SHISS1.271e-1247.83Succinylornithine transaminase OS=Shigella sonnei ... [more]
ASTC_SHIBS1.271e-1247.83Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_SHIB31.271e-1247.83Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_SALTY1.271e-1247.83Succinylornithine transaminase OS=Salmonella typhi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504582 ID=CF504582; Name=CF504582; organism=Citrus sinensis; type=EST; length=309bp
CAAGGAGGTGATGGAGGCGGAGAATAAGTTACTCGTGGGGACGTACAATA
GGGCACCAGTTGTGCTGGCGAGTGGTAAAGGATGTAAATTGTACGATGCC
TGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAATGCGC
TTGGACATGGGGATGCTGATTGGATCAAGGCTGTTGTTGATCAAGCTAAT
GTGTTGACTCATGTTAGCAATATGTATTATTCCATTCCTCAGATAGAGCT
TGCTAAGCGTTTGGTGGCTTGTTCTTTTGCTGATCGTGTGTTTTTCTCCA
ATACTGGAA
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