CF504582 | Citrus Genome Database

Overview


Name	CF504582
Unique Name	CF504582
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	309

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig189	contig	Csv1_Contig189:288..595.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOUT (Succinylornithine transaminase OS=Escherichia coli (strain UTI89 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSM (Succinylornithine transaminase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSE (Succinylornithine transaminase OS=Escherichia coli (strain SE11) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLU (Succinylornithine transaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLI (Succinylornithine transaminase OS=Escherichia coli (strain K12) GN=astC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLC (Succinylornithine transaminase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL6 (Succinylornithine transaminase OS=Escherichia coli O6 GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL5 (Succinylornithine transaminase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOK1 (Succinylornithine transaminase OS=Escherichia coli O1:K1 / APEC GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECOHS (Succinylornithine transaminase OS=Escherichia coli O9:H4 (strain HS) GN=astC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.271e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 3

Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y + P + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 1.271e-12
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2

Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35

The following BLAST results are available for this feature:

BLAST of CF504582 vs. ExPASy Swiss-Prot

BLAST of CF504582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
ASTC_ECOUT	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOSM	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOSE	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOLU	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOLI	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOLC	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOL6	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOL5	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOK1	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]
ASTC_ECOHS	1.271e-12	47.83	Succinylornithine transaminase OS=Escherichia coli...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504582 ID=CF504582; Name=CF504582; organism=Citrus sinensis; type=EST; length=309bp
CAAGGAGGTGATGGAGGCGGAGAATAAGTTACTCGTGGGGACGTACAATA
GGGCACCAGTTGTGCTGGCGAGTGGTAAAGGATGTAAATTGTACGATGCC
TGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAATGCGC
TTGGACATGGGGATGCTGATTGGATCAAGGCTGTTGTTGATCAAGCTAAT
GTGTTGACTCATGTTAGCAATATGTATTATTCCATTCCTCAGATAGAGCT
TGCTAAGCGTTTGGTGGCTTGTTCTTTTGCTGATCGTGTGTTTTTCTCCA
ATACTGGAA