CF504582

Overview
NameCF504582
Unique NameCF504582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig189 contig Csv1_Contig189:288..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SALDC (Succinylornithine transaminase OS=Salmonella dublin (strain CT_02021853) GN=astC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.784e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH      +A+ +QAN   H  N Y + P + LAK+L+  +FA+RVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPALREALNEQANRFWHTGNGYTNEPALRLAKKLIDATFAERVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 2.784e-12
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            +V  Y  AP +   G+G +L+D
Sbjct:   14 MVPVYVPAPFIPVRGEGSRLWD 35
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SALA4 (Succinylornithine transaminase OS=Salmonella agona (strain SL483) GN=astC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.784e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH      +A+ +QAN   H  N Y + P + LAK+L+  +FA+RVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPALREALNEQANRFWHTGNGYTNEPALRLAKKLIDATFAERVFFCNSG 105

HSP 2 Score: 20.4014 bits (41), Expect = 2.784e-12
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            +V  Y  AP +   G+G +L+D
Sbjct:   14 MVPVYIPAPFIPVRGEGSRLWD 35
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_SALCH (Succinylornithine transaminase OS=Salmonella choleraesuis GN=astC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH      +A+ +QAN   H  N Y + P + LAK+L+  +FA+RVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPALREALNEQANRFWHTGNGYTNEPALRLAKKLIDATFAERVFFCNSG 105
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_YERPE (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Yersinia pestis GN=argD PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G EY+D + GIAV ALGH     + A+  Q   L H SN++ + P + LA++L+A +FADRVFF+N+G
Sbjct:   39 QGTEYIDFAGGIAVTALGHCHPALVSALHQQGETLWHTSNVFTNEPALRLAQKLIAATFADRVFFANSG 107
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_AGRT5 (Acetylornithine aminotransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=argD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            G  YLD ++G+AVN+LGH     ++A+  QA  + HVSN+Y    Q +LAKRL   +FAD+VFF+N+G
Sbjct:   32 GERYLDFAAGVAVNSLGHAHPHLVEAIKTQAEKVWHVSNLYEVPGQEKLAKRLTEATFADKVFFTNSG 99
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERPS (Succinylornithine transaminase OS=Yersinia pseudotuberculosis GN=astC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.692e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107

HSP 2 Score: 20.7866 bits (42), Expect = 4.692e-12
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            LV TY  A  ++  G+G  L+D
Sbjct:   16 LVPTYAPADFIVVRGEGSTLWD 37
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_RHILO (Acetylornithine aminotransferase OS=Rhizobium loti GN=argD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G  YLD + GIAVN+LGH     + A+ +QA  L HVSN+Y    Q  L +RLV  +FAD+VFF+N+G
Sbjct:   29 KGERYLDFAGGIAVNSLGHSHPHLVAALTEQAAKLWHVSNLYEIPGQSRLGQRLVDATFADKVFFTNSG 97
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERE8 (Succinylornithine transaminase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=astC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.092e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVKAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107

HSP 2 Score: 20.4014 bits (41), Expect = 6.092e-12
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            +V TY  A  ++  G+G  L+D
Sbjct:   16 IVPTYAPADFIVVRGEGATLWD 37
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERPG (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=astC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107
[Close]
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERPE (Succinylornithine transaminase OS=Yersinia pestis GN=astC PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107
The following BLAST results are available for this feature:
BLAST of CF504582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ASTC_SALDC2.784e-1247.83Succinylornithine transaminase OS=Salmonella dubli... [more]
ASTC_SALA42.784e-1247.83Succinylornithine transaminase OS=Salmonella agona... [more]
ASTC_SALCH3.031e-1247.83Succinylornithine transaminase OS=Salmonella chole... [more]
ARGD_YERPE3.031e-1246.38Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_AGRT53.031e-1248.53Acetylornithine aminotransferase OS=Agrobacterium ... [more]
ASTC_YERPS4.692e-1244.93Succinylornithine transaminase OS=Yersinia pseudot... [more]
ARGD_RHILO5.169e-1249.28Acetylornithine aminotransferase OS=Rhizobium loti... [more]
ASTC_YERE86.092e-1244.93Succinylornithine transaminase OS=Yersinia enteroc... [more]
ASTC_YERPG6.751e-1244.93Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERPE6.751e-1244.93Succinylornithine transaminase OS=Yersinia pestis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504582 ID=CF504582; Name=CF504582; organism=Citrus sinensis; type=EST; length=309bp
CAAGGAGGTGATGGAGGCGGAGAATAAGTTACTCGTGGGGACGTACAATA
GGGCACCAGTTGTGCTGGCGAGTGGTAAAGGATGTAAATTGTACGATGCC
TGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAATGCGC
TTGGACATGGGGATGCTGATTGGATCAAGGCTGTTGTTGATCAAGCTAAT
GTGTTGACTCATGTTAGCAATATGTATTATTCCATTCCTCAGATAGAGCT
TGCTAAGCGTTTGGTGGCTTGTTCTTTTGCTGATCGTGTGTTTTTCTCCA
ATACTGGAA
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