CF504582

Overview
NameCF504582
Unique NameCF504582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig189 contig Csv1_Contig189:288..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERPA (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=astC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_YERP3 (Succinylornithine transaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=astC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+ Y+D + GIAVNALGHG      A+++QA+ + H+ N Y + P + LAK+L+  +FA++VFF N+G
Sbjct:   39 QGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKVWHLGNGYTNEPVLRLAKQLIDATFAEKVFFCNSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_VIBCH (Acetylornithine aminotransferase OS=Vibrio cholerae GN=argD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G EY+D + GIAV+ LGH     ++A+  QAN L H+SN+  + P + LAK+L   SFA++VFF+N+G
Sbjct:   39 QGHEYIDFAGGIAVSCLGHCHPVMVQALTTQANKLWHLSNVMTNEPALRLAKKLTQVSFAEKVFFANSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_RHIME (Acetylornithine aminotransferase OS=Rhizobium meliloti GN=argD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.818e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G  YLD ++G+AVN+LGH     ++A+  QA+ + H+SN+Y    Q  LA+RL   +FADRVFF+N+G
Sbjct:   30 DGTRYLDFAAGVAVNSLGHAHPHLVEALKAQADKVWHLSNLYEIAGQESLARRLTQVTFADRVFFTNSG 98          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECO5E (Succinylornithine transaminase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=astC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.027e-11
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y +   + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNESVLRLAKKLIDATFADRVFFCNSG 105          

HSP 2 Score: 20.4014 bits (41), Expect = 1.027e-11
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ASTC_ECO57 (Succinylornithine transaminase OS=Escherichia coli O157:H7 GN=astC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.027e-11
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  102 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            +G+EY+D + GIAVNALGH   +  +A+ +QA+   H  N Y +   + LAK+L+  +FADRVFF N+G
Sbjct:   37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNESVLRLAKKLIDATFADRVFFCNSG 105          

HSP 2 Score: 20.4014 bits (41), Expect = 1.027e-11
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 2
Query:   32 LVGTYNRAPVVLASGKGCKLYD 97
            ++  Y  AP +   G+G +L+D
Sbjct:   14 MIPVYAPAPFIPVRGEGSRLWD 35          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARUC_PSEAE (Succinylornithine transaminase/acetylornithine aminotransferase OS=Pseudomonas aeruginosa GN=aruC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            GRE +D + GIAV +LGH     +KA+ +QA  + HVSN++ + P + LA++LV  +FA+RVF +N+G
Sbjct:   41 GRELIDFAGGIAVTSLGHAHPALVKALTEQAQRIWHVSNVFTNEPALRLARKLVDATFAERVFLANSG 108          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_VIBVY (Acetylornithine aminotransferase OS=Vibrio vulnificus (strain YJ016) GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            G EY+D + GIAV+ LGH     + A+ +QA  L H+SN+  + P + LAK+L   SFA+RVFF+N+G
Sbjct:   40 GNEYIDFAGGIAVSCLGHCHPVMVNALTEQAGKLWHLSNVMTNEPALRLAKKLTEVSFAERVFFANSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_VIBVU (Acetylornithine aminotransferase OS=Vibrio vulnificus GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  105 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTG 308
            G EY+D + GIAV+ LGH     + A+ +QA  L H+SN+  + P + LAK+L   SFA+RVFF+N+G
Sbjct:   40 GNEYIDFAGGIAVSCLGHCHPVMVNALTEQAGKLWHLSNVMTNEPALRLAKKLTEVSFAERVFFANSG 107          
BLAST of CF504582 vs. ExPASy Swiss-Prot
Match: ARGD_CORGL (Acetylornithine aminotransferase OS=Corynebacterium glutamicum GN=argD PE=3 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.733e-11
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 3
Query:   78 KDVNCTMPEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD--------RVFFSNTG 308
            K    T  +G  Y+DL +GIAVNALGH     I+AV +Q   L HVSN++ S P +E+A+ L+     D        RVFF N+G
Sbjct:   26 KGATVTDDQGNVYIDLLAGIAVNALGHAHPAIIEAVTNQIGQLGHVSNLFASRPVVEVAEELIKRFSLDDATLAAQTRVFFCNSG 110          

HSP 2 Score: 26.5646 bits (57), Expect = 1.733e-11
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 2
Query:   11 MEAENKLLVGTYNRAPVVLASGKGCKLYD 97
            +E   ++++ TY   PV L SGKG  + D
Sbjct:    4 LETWPQVIINTYGTPPVELVSGKGATVTD 32          
The following BLAST results are available for this feature:
BLAST of CF504582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ASTC_YERPA6.751e-1244.93Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERP36.751e-1244.93Succinylornithine transaminase OS=Yersinia pseudot... [more]
ARGD_VIBCH6.751e-1246.38Acetylornithine aminotransferase OS=Vibrio cholera... [more]
ARGD_RHIME8.818e-1246.38Acetylornithine aminotransferase OS=Rhizobium meli... [more]
ASTC_ECO5E1.027e-1146.38Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO571.027e-1146.38Succinylornithine transaminase OS=Escherichia coli... [more]
ARUC_PSEAE1.152e-1145.59Succinylornithine transaminase/acetylornithine ami... [more]
ARGD_VIBVY1.504e-1147.06Acetylornithine aminotransferase OS=Vibrio vulnifi... [more]
ARGD_VIBVU1.504e-1147.06Acetylornithine aminotransferase OS=Vibrio vulnifi... [more]
ARGD_CORGL1.733e-1142.35Acetylornithine aminotransferase OS=Corynebacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504582 ID=CF504582; Name=CF504582; organism=Citrus sinensis; type=EST; length=309bp
CAAGGAGGTGATGGAGGCGGAGAATAAGTTACTCGTGGGGACGTACAATA
GGGCACCAGTTGTGCTGGCGAGTGGTAAAGGATGTAAATTGTACGATGCC
TGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAATGCGC
TTGGACATGGGGATGCTGATTGGATCAAGGCTGTTGTTGATCAAGCTAAT
GTGTTGACTCATGTTAGCAATATGTATTATTCCATTCCTCAGATAGAGCT
TGCTAAGCGTTTGGTGGCTTGTTCTTTTGCTGATCGTGTGTTTTTCTCCA
ATACTGGAA
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