CF504584

Overview
NameCF504584
Unique NameCF504584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.453e-44
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +  C GW+SVYC P RA FKGSAPINLSDRLHQVLRWALGSVEIF+SRHCP+WY YG
Sbjct:  766 GFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYG 824

HSP 2 Score: 87.8113 bits (216), Expect = 1.453e-44
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A+L+KEAI VISCGYE+KTEWGKE+GWIYGSVTEDILTGFKMH
Sbjct:  728 AALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMH 770
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.191e-44
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G R  C GW+SVYC+PKR  FKGSAPINLSDRLHQVLRWALGSVEIF SRHCP+WY +G
Sbjct:  752 GFRMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYAWG 810

HSP 2 Score: 86.6557 bits (213), Expect = 4.191e-44
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            +SL+KEAI VISCGYE+KTEWGKE+GWIYGSVTEDILTGF+MH
Sbjct:  714 SSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFRMH 756
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.676e-43
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G +  C GWRS+YC+P R  FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCP+WYG
Sbjct:  687 GFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYG 743

HSP 2 Score: 86.2705 bits (212), Expect = 2.676e-43
Identity = 36/43 (83.72%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            ++L+KEAI VISCGYE+KTEWGKE+GWIYGS+TEDILTGFKMH
Sbjct:  649 STLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMH 691
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.484e-43
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +    GWRS+YC+PKR  FKGSAPINLSDRL+QVLRWALGSVEI  SRHCPIWYGYG
Sbjct:  785 GFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 843

HSP 2 Score: 87.4261 bits (215), Expect = 3.484e-43
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            SLLKEAI VISCGYEDKTEWG E+GWIYGSVTEDILTGFKMH
Sbjct:  748 SLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMH 789
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.222e-42
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +    GWRS+YC+PKR  FKGSAPINLSDRL+QVLRWALGSVEI  SRHCPIWYGYG
Sbjct:  777 GFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 835

HSP 2 Score: 84.7297 bits (208), Expect = 2.222e-42
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            SLLKEAI VISCGYEDK++WG E+GWIYGSVTEDILTGFKMH
Sbjct:  740 SLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMH 781
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.222e-42
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 296
            G +    GWRS+YC+PKR  FKGSAPINLSDRL+QVLRWALGSVEI  SRHCPIWYGYG
Sbjct:  777 GFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 835

HSP 2 Score: 84.7297 bits (208), Expect = 2.222e-42
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            SLLKEAI VISCGYEDK++WG E+GWIYGSVTEDILTGFKMH
Sbjct:  740 SLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMH 781
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.897e-42
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +  C GWRS+YC+PKR  FKGSAPINLSDRL+QVLRWALGSVEIF SRH P+WYGY
Sbjct:  730 GFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLWYGY 787

HSP 2 Score: 85.5001 bits (210), Expect = 2.897e-42
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A LLKEAI VISCGYEDKTEWG E+GWIYGS+TEDILTGFKMH
Sbjct:  692 AVLLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMH 734
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.406e-41
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +  C GWRSVYC+PKRA FKGSAPINLSDRL+QVLRWALGSVEIF SRH P+ YGY
Sbjct:  757 GFKMHCRGWRSVYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGY 814

HSP 2 Score: 85.1149 bits (209), Expect = 2.406e-41
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A+LLKEAI VISCGYEDKT+WG E+GWIYGS+TEDILTGFKMH
Sbjct:  719 AALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMH 761
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.406e-41
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +  C GWRSVYC+PKRA FKGSAPINLSDRL+QVLRWALGSVEIF SRH P+ YGY
Sbjct:  757 GFKMHCRGWRSVYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGY 814

HSP 2 Score: 85.1149 bits (209), Expect = 2.406e-41
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            A+LLKEAI VISCGYEDKT+WG E+GWIYGS+TEDILTGFKMH
Sbjct:  719 AALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMH 761
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.534e-40
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +    GWRS+YC+PK   FKGSAPINLSDRL+QVLRWALGSVEI  SRHCPIWYGY
Sbjct:  769 GFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 826

HSP 2 Score: 83.5741 bits (205), Expect = 1.534e-40
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            +LLKEAI VISCGYEDK++WG E+GWIYGSVTEDILTGFKMH
Sbjct:  732 NLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMH 773
The following BLAST results are available for this feature:
BLAST of CF504584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CESA7_ORYSJ1.453e-4479.66Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ARATH4.191e-4479.66Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA8_ARATH2.676e-4380.70Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA8_ORYSJ3.484e-4377.97Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ2.222e-4277.97Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.222e-4277.97Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA7_ARATH2.897e-4277.59Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ORYSJ2.406e-4179.31Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI2.406e-4179.31Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA3_ARATH1.534e-4075.86Cellulose synthase A catalytic subunit 3 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-073 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504584 ID=CF504584; Name=CF504584; organism=Citrus sinensis; type=EST; length=296bp
GCGAGCTTCACTATTGAAAGAAGCAATCCAAGTGATCAGCTGTGGTTATG
AAGATAAAACAGAATGGGGGAAGGAAGTTGGCTGGATATATGGTTCTGTG
ACTGAGGATATCCTGACTGGGTTTAAGATGCACCTGCCATGGTTGGAGAT
CTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCCATC
AATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTGT
TGAGATATTCTTGAGCAGACATTGTCCAATCTGGTATGGTTATGGG
back to top