CF504584

Overview
NameCF504584
Unique NameCF504584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.600e-29
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G R    GWRS YC+ +   F+GSAPINL+DRLHQVLRWA GSVEIF SR+  I+ G
Sbjct:  687 GFRMHEKGWRSFYCVTEPDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAIFAG 743

HSP 2 Score: 72.7886 bits (177), Expect = 1.600e-29
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            + EA+ VISC YEDKTEWG  VGWIYGSVTED++TGF+MH
Sbjct:  652 VNEAVNVISCWYEDKTEWGFNVGWIYGSVTEDVVTGFRMH 691
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.522e-24
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G R    GWRS+YC  +   F+G+APINL++RL+Q+LRW+ GS+E+F S +CP+  G
Sbjct:  581 GFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG 637

HSP 2 Score: 62.003 bits (149), Expect = 6.522e-24
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            S+L+E    ++C YED T+WGK+VGW+Y   TED++TGF++H
Sbjct:  544 SILQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLH 585
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.870e-23
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G R    GWRS+YC  +   F+G+APINL++RL+Q+LRW+ GS+E+F SR+CP+  G
Sbjct:  569 GFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAG 625

HSP 2 Score: 57.3806 bits (137), Expect = 1.870e-23
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            + E  +V++C YED TEWG  VGW+Y   TED++TGF++H
Sbjct:  534 MAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLH 573
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.169e-23
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:  141 GWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRH 272
            GWRS Y       F+G+APINL+DRLHQVLRWA GS+EIF SR+
Sbjct:  540 GWRSAYYAAAPDAFRGTAPINLADRLHQVLRWAAGSLEIFFSRN 583

HSP 2 Score: 63.1586 bits (152), Expect = 3.169e-23
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            + EA  ++SC YED T WG++VGW+YG+VTED+ TGF MH
Sbjct:  498 IAEASALVSCAYEDGTAWGRDVGWVYGTVTEDVATGFCMH 537
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.471e-22
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +    GW S+YC+P R CFKGSAPINLSDRL+QVLRWALGSVEI LSRHCPIWYGY
Sbjct:  779 GFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGY 836

HSP 2 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHL-PWLEICILHSQTGLL*GISPHQSFRSSTP 223
            ASLLKEAI VISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH   W+ I  +           P   F+ S P
Sbjct:  741 ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCM----------PPRPCFKGSAP 804
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.471e-22
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +    GW S+YC+P R CFKGSAPINLSDRL+QVLRWALGSVEI LSRHCPIWYGY
Sbjct:  779 GFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGY 836

HSP 2 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHL-PWLEICILHSQTGLL*GISPHQSFRSSTP 223
            ASLLKEAI VISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH   W+ I  +           P   F+ S P
Sbjct:  741 ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCM----------PPRPCFKGSAP 804
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.393e-22
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIW 284
            G R    GWRS YC      F G+APINL++RL QVLRW+ GS+EIF SR+ P++
Sbjct:  640 GYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLF 694

HSP 2 Score: 61.2326 bits (147), Expect = 4.393e-22
Identity = 21/41 (51.22%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHL 136
            + EA+ V +  YE KT WG ++GW+YG+VTED++TG++MH+
Sbjct:  605 IAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHI 645
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.533e-22
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +    GW S+YC+P R  FKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY
Sbjct:  771 GFKMHARGWISIYCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGY 828

HSP 2 Score: 85.5001 bits (210), Expect = 9.233e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHL-PWLEICILHSQ 169
            +LLKEAI VISCGYE KT+WGKE+GWIYGSVTEDILTGFKMH   W+ I  + S+
Sbjct:  734 TLLKEAIHVISCGYEAKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCVPSR 788
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.179e-21
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGY 293
            G +    GW S+YC P R  FKGSAPINLSDRL+QVLRWALGS+EI LSRHCPIWYGY
Sbjct:  784 GFKMHARGWISIYCNPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGY 841

HSP 2 Score: 90.8929 bits (224), Expect = 2.198e-18
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHL-PWLEI 151
            A+LLKEAI VISCGYEDKTEWGKE+GWIYGSVTEDILTGFKMH   W+ I
Sbjct:  746 ATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISI 795
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.843e-20
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLS 266
            G R    GWRSVY   + A F+G+APINL++RL+Q+LRW+ GS+E+F S
Sbjct:  583 GFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFS 631

HSP 2 Score: 56.225 bits (134), Expect = 3.843e-20
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            S+  +   + +C YED T WG++VGW+Y   TED++TGF+MH
Sbjct:  546 SVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMH 587
The following BLAST results are available for this feature:
BLAST of CF504584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CSLD6_ARATH1.600e-2963.16Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLF8_ORYSJ6.522e-2450.88Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF9_ORYSJ1.870e-2352.63Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF7_ORYSJ3.169e-2365.91Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CESA1_ORYSJ1.471e-2277.59Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI1.471e-2277.59Probable cellulose synthase A catalytic subunit 1 ... [more]
CSLF6_ORYSJ4.393e-2254.55Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CESAA_ARATH9.533e-2274.14Probable cellulose synthase A catalytic subunit 10... [more]
CESA1_ARATH6.179e-2174.14Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CSLF2_ORYSJ3.843e-2055.10Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-073 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504584 ID=CF504584; Name=CF504584; organism=Citrus sinensis; type=EST; length=296bp
GCGAGCTTCACTATTGAAAGAAGCAATCCAAGTGATCAGCTGTGGTTATG
AAGATAAAACAGAATGGGGGAAGGAAGTTGGCTGGATATATGGTTCTGTG
ACTGAGGATATCCTGACTGGGTTTAAGATGCACCTGCCATGGTTGGAGAT
CTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCCATC
AATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTGT
TGAGATATTCTTGAGCAGACATTGTCCAATCTGGTATGGTTATGGG
back to top