CF504584

Overview
NameCF504584
Unique NameCF504584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.845e-20
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLS 266
            G R    GWRSVY   + A F+G+APINL++RL+Q+LRW+ GS+E+F S
Sbjct:  553 GFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFS 601          

HSP 2 Score: 56.225 bits (134), Expect = 3.845e-20
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 2
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            S+  +   + +C YED T WG++VGW+Y   TED++TGF+MH
Sbjct:  516 SVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMH 557          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.143e-19
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLS 266
            G R    GWRSVY   + A F+G+APINL++RL+Q+LRW+ GS+E+F S
Sbjct:  592 GFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFS 640          

HSP 2 Score: 53.5286 bits (127), Expect = 3.143e-19
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            S+ ++   V +CGY+  T WG++ GW+Y   TED+ TGF+MH
Sbjct:  555 SVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMH 596          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.993e-19
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPI 281
            G R    GWRS+YC  +   F G+APINL++RLHQ++RW+ GS+E+F S + P+
Sbjct:  577 GFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPL 630          

HSP 2 Score: 48.521 bits (114), Expect = 8.993e-19
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            + E   V+S  ++ +T+WGK VG+IY   TEDI+TGF++H
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIH 581          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.993e-19
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPI 281
            G R    GWRS+YC  +   F G+APINL++RLHQ++RW+ GS+E+F S + P+
Sbjct:  577 GFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPL 630          

HSP 2 Score: 48.521 bits (114), Expect = 8.993e-19
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:   14 LKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            + E   V+S  ++ +T+WGK VG+IY   TEDI+TGF++H
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIH 581          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.982e-18
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G R  C GWRSV+C PKRA F G +P +L D + Q  RWA+G +E+ +SR+ PI YG
Sbjct:  470 GYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRYSPITYG 526          

HSP 2 Score: 43.8986 bits (102), Expect = 1.982e-18
Identity = 18/41 (43.90%), Postives = 27/41 (65.85%), Query Frame = 2
Query:   11 LLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            +L  A +V  C YE  T WG ++G+ YGS+ ED  TG+++H
Sbjct:  434 VLALAHRVAGCIYELNTNWGSKIGFRYGSLVEDYYTGYRLH 474          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.815e-17
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G    C GWRS++C P +A F G +P  L+D + Q +RW++G +E+  SR+ P+ YG
Sbjct:  441 GFMLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYG 497          

HSP 2 Score: 46.2098 bits (108), Expect = 7.815e-17
Identity = 19/41 (46.34%), Postives = 25/41 (60.98%), Query Frame = 2
Query:   11 LLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            +L  A  V  C YE  T WG ++G+ YGS+ ED  TGF +H
Sbjct:  405 ILALAHDVAGCNYECNTNWGSKIGFRYGSLVEDYFTGFMLH 445          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.319e-16
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYG 290
            G    C GWRSV+C PK+A F G +P  L D + Q +RWA+G  E+  S++ PI YG
Sbjct:  451 GFMLHCEGWRSVFCNPKKAAFYGDSPKCLVDLVGQQIRWAVGLFEMSFSKYSPITYG 507          

HSP 2 Score: 44.2838 bits (103), Expect = 1.319e-16
Identity = 19/41 (46.34%), Postives = 25/41 (60.98%), Query Frame = 2
Query:   11 LLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            +L  A  V  C YE  T WG ++G+ YGS+ ED  TGF +H
Sbjct:  415 VLSLAHNVAGCIYEYNTNWGSKIGFRYGSLVEDYYTGFMLH 455          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.222e-16
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 2
Query:    8 SLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH 133
            SLLKEAI V+SC +E++T WGKE+GW+YG     + TGF+MH
Sbjct:  518 SLLKEAIHVVSCAFEERTRWGKEIGWMYGG---GVATGFRMH 556          

HSP 2 Score: 43.5134 bits (101), Expect = 2.222e-16
Identity = 23/58 (39.66%), Postives = 30/58 (51.72%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLS-RHCPIWYG 290
            G R    GW S YC P R  F+  A  + +D L    R A+ ++ I LS RH P+W G
Sbjct:  552 GFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAG 609          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRH 272
            G R    GWRSVYCI KR  F+GSAPINL+DRLHQVLRWA GSVEIF SR+
Sbjct:  813 GYRMHNRGWRSVYCITKRDSFRGSAPINLTDRLHQVLRWATGSVEIFFSRN 863          

HSP 2 Score: 73.1738 bits (178), Expect = 4.742e-13
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH-LPWLEICILHSQTGLL*GISPHQSFRSSTP 223
            A+ + E++ VISC YEDKTEWG  VGWIYGSVTED++TG++MH   W  +            I+   SFR S P
Sbjct:  775 ATTVAESVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYC----------ITKRDSFRGSAP 838          
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.602e-14
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRH 272
            G R    GW+SVYC+  R  F+G+APINL+DRLHQVLRWA GSVEIF SR+
Sbjct:  832 GYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 882          

HSP 2 Score: 75.485 bits (184), Expect = 9.555e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH-LPWLEI-CILH 163
            AS++ EAI V+SC YE+KTEWG  VGWIYGSVTED++TG++MH   W  + C+ H
Sbjct:  794 ASIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTH 848          
The following BLAST results are available for this feature:
BLAST of CF504584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CSLF1_ORYSJ3.845e-2055.10Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ3.143e-1955.10Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF3_ORYSJ8.993e-1950.00Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI8.993e-1950.00Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLG3_ARATH1.982e-1852.63Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH7.815e-1742.11Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG1_ARATH1.319e-1647.37Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CESAB_ORYSJ2.222e-1659.52Putative cellulose synthase A catalytic subunit 11... [more]
CSLD4_ARATH2.274e-1574.51Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD1_ORYSJ5.602e-1466.67Cellulose synthase-like protein D1 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-073 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504584 ID=CF504584; Name=CF504584; organism=Citrus sinensis; type=EST; length=296bp
GCGAGCTTCACTATTGAAAGAAGCAATCCAAGTGATCAGCTGTGGTTATG
AAGATAAAACAGAATGGGGGAAGGAAGTTGGCTGGATATATGGTTCTGTG
ACTGAGGATATCCTGACTGGGTTTAAGATGCACCTGCCATGGTTGGAGAT
CTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCCATC
AATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTGT
TGAGATATTCTTGAGCAGACATTGTCCAATCTGGTATGGTTATGGG
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