CF504584

Overview
NameCF504584
Unique NameCF504584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504584 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.602e-14
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  120 GLRCTCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRH 272
            G R    GW+SVYC+  R  F+G+APINL+DRLHQVLRWA GSVEIF SR+
Sbjct:  832 GYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 882

HSP 2 Score: 75.485 bits (184), Expect = 9.555e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 2 
Query:    5 ASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMH-LPWLEI-CILH 163
            AS++ EAI V+SC YE+KTEWG  VGWIYGSVTED++TG++MH   W  + C+ H
Sbjct:  794 ASIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTH 848
The following BLAST results are available for this feature:
BLAST of CF504584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CSLD1_ORYSI5.602e-1466.67Cellulose synthase-like protein D1 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-073 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504584 ID=CF504584; Name=CF504584; organism=Citrus sinensis; type=EST; length=296bp
GCGAGCTTCACTATTGAAAGAAGCAATCCAAGTGATCAGCTGTGGTTATG
AAGATAAAACAGAATGGGGGAAGGAAGTTGGCTGGATATATGGTTCTGTG
ACTGAGGATATCCTGACTGGGTTTAAGATGCACCTGCCATGGTTGGAGAT
CTGTATACTGCATTCCCAAACGGGCTTGCTTTAAGGGATCAGCCCCCATC
AATCTTTCAGATCGTCTACACCAGGTTCTTCGGTGGGCCTTGGGATCTGT
TGAGATATTCTTGAGCAGACATTGTCCAATCTGGTATGGTTATGGG
back to top