CF504585

Overview
NameCF504585
Unique NameCF504585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:37..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.031e-15
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CPGG CCS+FGWCG TTDYC + CQS C            G +    +L  +ISR  F+ +L++RND  CP
Sbjct:   28 QCGRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCG-----------GPSPAPTDLSALISRSTFDQVLKHRNDGACP 97          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.031e-15
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCE--GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CPGG CCS+FGWCG T DYC +  GCQS C+           G+ GD G L  +I+R+ F+ +L +RND  CP
Sbjct:   23 QCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCP 94          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G VCP G CCS+FG+CG T  YC +GCQS C         P   T   GG++G+++   +F+ +L+YRND RC
Sbjct:   25 QCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTG--GGDVGRLVPSSLFDQMLKYRNDGRC 101          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 38/81 (46.91%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G  C  G CCS+FGWCG T DYC  G CQS C         P   T   GG+LG IIS  MF+ +L++RND  C
Sbjct:   25 QCGSQAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQC---------PGGPTPPGGGDLGSIISSSMFDQMLKHRNDNAC 96          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 37/82 (45.12%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CP G CCS FGWCG T  YC + GCQS        +C P     G  G+L  IIS   F+D+L++RND  CP
Sbjct:   35 QCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQS--------QCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACP 108          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC--DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G +CP   CCS++GWCG T+DYC  GCQS C+    G C   P   ++G G  +  IIS  +F+ +L +RND+ C
Sbjct:   20 QCGSQAGGALCPNCLCCSQYGWCGSTSDYCGAGCQSQCS----GGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQAC 97          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYC-CEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CP
Sbjct:    2 QCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACP 74          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYC-CEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CP
Sbjct:   24 QCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACP 96          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCG----ECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G  CP   CCSRFGWCG T+DYC +GCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C
Sbjct:   21 QCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGAC 101          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G  CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CP
Sbjct:   34 QCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACP 111          
The following BLAST results are available for this feature:
BLAST of CF504585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI5_PHAVU5.031e-1544.44Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_THECC5.031e-1545.78Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA1.464e-1443.75Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_TOBAC2.497e-1446.91Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIB_ARATH4.259e-1445.12Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_ORYSJ4.259e-1442.68Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI4.259e-1446.34Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI4.259e-1446.34Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIA_SECCE5.562e-1445.24Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_ORYSJ5.562e-1446.34Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-074 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504585 ID=CF504585; Name=CF504585; organism=Citrus sinensis; type=EST; length=301bp
GGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTA
GGAGGCTCAGCAGGGAACTGTGGAAGCCGGCGTTGTGTGCCCAGGAGGGG
AGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGT
GAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCC
CGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
G
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