CF504585

Overview
NameCF504585
Unique NameCF504585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:37..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 39/82 (47.56%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCE-GCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCP 300
            Q G    G +CP G CCS FGWCG T  YC + GCQS      CG   P     G  G+L  IISR  F+D+L++RND  CP
Sbjct:   22 QCGRQAGGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQ-----CGGTPP-----GPTGDLSGIISRSQFDDMLKHRNDNACP 93          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.265e-14
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G    G  C  G CCS FGWCG T DYC  G CQS C      +  P  G    GG++G +IS  MF+ +L++RND  C
Sbjct:   20 QCGKQAGGARCAAGLCCSNFGWCGNTNDYCGPGKCQSQCPSGPSPK-PPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNAC 99          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   64 GTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISRKMFEDLLEYRNDKRC 297
            G+   G  C  G+CCS+FGWCG T DYC  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C
Sbjct:   30 GSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSC 100          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C
Sbjct:   20 QCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNAC 89          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C
Sbjct:   20 QCGSQAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNAC 89          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G +C  G CCS+FGWCG T +YC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C
Sbjct:   24 QCGSQAGGALCASGLCCSKFGWCGNTNEYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNAC 93          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G +C  G CCS+FGWCG T DYC  G CQS C               G  G+LG +IS  MF+ +L +RND  C
Sbjct:   20 QCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQC-------------PGGSPGDLGGVISNSMFDQMLNHRNDNAC 87          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRC 297
            Q G+   G  CP   CCSRFGWCG +T YC +GCQS C+    G   P   T   GG +  I+SR +F+ +L +RND  C
Sbjct:   21 QCGSQAGGATCPNCLCCSRFGWCG-STPYCGDGCQSQCSG-CGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGAC 98          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.150e-13
Identity = 37/82 (45.12%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDG-GELGKIISRKMFEDLLEYRNDKRC 297
            Q G    G  CP G CCS FGWCG T DYC  G CQS C         P   T G   G++  IIS  MF+ +L++RND  C
Sbjct:   25 QCGKQAGGARCPSGMCCSNFGWCGNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTC 106          
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 38/88 (43.18%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCP 300
            Q G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CP
Sbjct:   34 QCGRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACP 119          
The following BLAST results are available for this feature:
BLAST of CF504585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI2_BRANA5.562e-1447.56Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI4_SOLTU7.265e-1444.44Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU9.488e-1445.00Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_SOLTU9.488e-1444.44Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.239e-1344.44Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC2.114e-1343.21Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_SOLTU3.605e-1343.21Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU3.605e-1345.0026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_TOBAC6.150e-1345.12Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI7_ORYSJ3.052e-1243.18Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-074 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504585 ID=CF504585; Name=CF504585; organism=Citrus sinensis; type=EST; length=301bp
GGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTA
GGAGGCTCAGCAGGGAACTGTGGAAGCCGGCGTTGTGTGCCCAGGAGGGG
AGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGT
GAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCC
CGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
G
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