CF504585

Overview
NameCF504585
Unique NameCF504585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:37..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504585 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 38/88 (43.18%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:   58 QQGTVEAGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCP 300
            Q G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CP
Sbjct:   34 QCGRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACP 119
The following BLAST results are available for this feature:
BLAST of CF504585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI7_ORYSI3.052e-1243.18Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-074 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504585 ID=CF504585; Name=CF504585; organism=Citrus sinensis; type=EST; length=301bp
GGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTA
GGAGGCTCAGCAGGGAACTGTGGAAGCCGGCGTTGTGTGCCCAGGAGGGG
AGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGT
GAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCC
CGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
G
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