CF504591

Overview
NameCF504591
Unique NameCF504591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.849e-45
Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKP-QKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGS----AGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYD 417
            PHR+FSEEV+VL+ YFG L SG NAY+IG   KP QKWH+Y A+  P     P+ T+EMC+TGLD+E ASVF+KT +      A  MT  SGI  I+P+ +ICDF+F+PCGYSMN++ G+A ST+HVTPEDGFSYAS+E VG+D
Sbjct:  134 PHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFD 274          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 86/144 (59.72%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKP-QKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGS----AGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYD 417
            PHR+FSEEV+VL+ YFG L SG NAY+IG   KP QKWH+Y A+  P     P+ T+EMC+TGLD+E ASVF+KT +      A  MT  SGI  I+P+ +ICDF+F+PCGYSMN++ G A ST+HVTPEDGFSYAS+E VG+D
Sbjct:  134 PHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGLAFSTIHVTPEDGFSYASYEVVGFD 274          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.667e-43
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKP-QKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGS----AGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYD 417
            PHR+FSEEV VL+ YFG L SG NAY+IG   KP QKWH+Y A+ +P     P+ T+EMC+TGLD+  ASVF+KT +      A  MT  SGI  I+P+ ++CDF+F+PCGYSMN++ G+A ST+HVTPEDGFSYAS+E  G D
Sbjct:  127 PHRSFSEEVDVLNRYFGHLNSGGNAYVIGDPAKPGQKWHIYYATEQP---EQPMVTLEMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSAFSTIHVTPEDGFSYASYEVQGMD 267          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.463e-41
Identity = 80/144 (55.56%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKP-QKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGS----AGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYD 417
            PHR+FSEEV+ L+ YFG L SG NAY+IG   +P QKWHV+ A+  P     P+  +EMC+TGLD++ A VF+KT +      A  MT  SGI +I+P+ +ICDF+F+PCGYSMN++ G+A ST+HVTPEDGFSYAS+E +G D
Sbjct:  134 PHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHVFYATEYP---EQPMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVMGLD 274          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSASAEPL------------ISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSV-EGAAISTVHVTPEDGFSYASFET 405
            PH+ F+EEV+ LDS F        +Y +G S   + W++Y+ S   +            + SDP  TIE+ +  LD E  S+FYK +   A   TV SGI  ILP   I DF FDPCGYSMN + +     T+H+TPE+ FSY SFET
Sbjct:  123 PHQGFTEEVTYLDSIF----PNGRSYCLG-SMNLECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIFYKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFET 265          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.507e-19
Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS--AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFET 405
            PH +FS+EV+ L+  F        AY++G   K   W++Y A     P +      T E+ +  LD  +   F+K +  SA   TVNSGI  +LP S I DF+FDPCGYSMN +      T+H+TPE   SY SF+T
Sbjct:  152 PHCSFSDEVNFLNKIFD-----GQAYVMGDVNKDH-WNLYIADFRKNPTLQRTEQ-TFEVMMHDLDETVMKQFFKREGVSAWDTTVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNEFYWTIHITPESHCSYVSFDT 281          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.283e-17
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L++ F        AY +G       W++Y+    E  + S P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNAIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.287e-17
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L++ F        AY +G       W++Y+    E  + S P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNAIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    4 HRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSASAEPLISS--DPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILP-DSKICDFEFDPCGYSMNSV--EGAAISTVHVTPEDGFSYASFET 405
            H+NF  EV  LDS+F   V G +AY +G S K  +W++Y+   E    +   P  T+E+ ++ LD E+   F K  +       + +GI KI+P  + + D  FDPCGYSMN+   +    +T+HVTPE  FS+ASFET
Sbjct:  142 HKNFDAEVEYLDSFF---VDG-HAYCLG-SLKQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMRAGIDKIIPAGADVHDELFDPCGYSMNAYMNDTDQYATIHVTPEKAFSFASFET 275          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L++ F        AY +G       W++Y+    E  + + P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNAIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
The following BLAST results are available for this feature:
BLAST of CF504591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM_ORYSJ2.849e-4559.72S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI4.860e-4559.72S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_HORCH2.667e-4357.64S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_MAIZE1.463e-4155.56S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_DROME4.003e-2341.89S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_DICDI3.507e-1940.15S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_HUMAN3.283e-1737.96S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM1_MOUSE4.287e-1737.96S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_CAEEL7.313e-1739.57S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_BOVIN7.313e-1737.23S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-080 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504591 ID=CF504591; Name=CF504591; organism=Citrus sinensis; type=EST; length=427bp
CCTCATCGCAACTTTTCTGAAGAAGTTTCTGTCCTTGATAGCTATTTTGG
GAAGCTTGTTTCAGGAAGCAATGCATACATAATTGGTGGGTCAGGCAAGC
CACAGAAATGGCATGTATACTCTGCATCTGCAGAACCACTGATCTCTAGT
GACCCTGTTTTCACCATAGAGATGTGCTTGACTGGCCTGGATAGGGAAAT
GGCTTCTGTTTTCTACAAAACCCAATCAGGTTCAGCTGGTGCAATGACCG
TCAATTCTGGTATAAGAAAGATTCTTCCAGATTCCAAGATATGTGATTTT
GAGTTTGACCCTTGTGGTTATTCCATGAATTCTGTTGAAGGGGCTGCTAT
TTCTACTGTTCATGTTACTCCAGAGGATGGTTTCAGCTATGCCAGCTTTG
AAACAGTTGGTTATGATCCTAATGATG
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