CF504591

Overview
NameCF504591
Unique NameCF504591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSASA-EPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L++ F        AY +G       W++Y+    E  + + P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNAIF----PNGAAYCMGRMNS-DCWYLYTLDLPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L++ F        AY +G       W++Y+    E  + + P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNAIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L+  F        AY +G       W++Y+    E  + S P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNVIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS-AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EE+  L+  F        AY +G       W++Y+    E  + S P  T+E+ ++ LD  +   FY     +A  +T  SGIR ++P S I    F+PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  126 PHRNFQEEIEFLNVIF----PNGAAYCMGRMNS-DCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET 257          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.247e-16
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSASA-EPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG-AAISTVHVTPEDGFSYASFET 405
            PHRNF EEV  L+  F        AY +G       W++Y+    +  + S P  T+E+ ++ LD E+   FY  +  +A  +T  SGIR ++  S I    F PCGYSMN ++      T+H+TPE  FSY SFET
Sbjct:  128 PHRNFHEEVEFLNQIF----PNGAAYCMGRINS-DCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPDFSYVSFET 259          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.844e-15
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFE-FDPCGYSMNSV--EGAAISTVHVTPEDGFSYASFET 405
            PH +F  EV  L+ +F    +G +AY IG   +  +W +Y+      +   P  T+E+ + GL  ++ S F    S       + S I  ILP   +   E F PCGYS+N +        T+HVTPE  FSY SFET
Sbjct:  145 PHSSFETEVDYLEEHF----AGGSAYCIGPQ-RQDRWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTFSPNVSKDGKDCRMKSAINTILPPDIVVHEELFSPCGYSLNGLIPHSDHYITIHVTPEPDFSYVSFET 277          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.434e-12
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKW-HVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVN----SGIRKILPDS-KICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFET 405
            PH + +EE + L +YF         +I G       +  VY     P  + +    + M + GLDR     ++  +  S G  T      + + K+  DS K+ D +F+PCGYS+N++ GA   T+H+TPED  S+AS+ET
Sbjct:  142 PHLSMAEEFNTLRTYF----PSGKPFIFGPVDSDHYFLFVYDDVIRPCETENDT-QLSMTMYGLDRTQTKHWFSDRFISTGTETAAIRKATKLDKVADDSWKLHDLQFEPCGYSINTIRGAEYQTIHITPEDHCSFASYET 277          
BLAST of CF504591 vs. ExPASy Swiss-Prot
Match: DCAM_TRYBB (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.251e-12
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    1 PHRNFSEEVSVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYSAS--AEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTV----NSGIRKILPDSKIC-DFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFET 405
            PH + +EE   L S+F      S    I G      + +Y  S   +P  S D    + M + GLDR     +Y  +    G  T      +G+ +++ DS I  D +++PCGYS+N++ G+   T+H+TPE+  S+AS+ET
Sbjct:  142 PHLSMAEEFKTLRSHFP-----SGQPFIFGPIDSDHYFLYLDSDVVQPSCSDDA--QLSMTMYGLDRNQTKHWYSDKMLPTGPETAVIREATGLSEVVDDSWILHDLQYEPCGYSINAIRGSEYQTIHITPEEHCSFASYET 276          
The following BLAST results are available for this feature:
BLAST of CF504591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM_RAT9.551e-1737.23S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU9.551e-1737.23S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM2_MUSSP9.551e-1737.96S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE9.551e-1737.96S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_XENLA1.247e-1637.96S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_ONCVO6.844e-1534.78S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_TRYCR2.434e-1231.91S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]
DCAM_TRYBB9.251e-1231.69S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-080 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504591 ID=CF504591; Name=CF504591; organism=Citrus sinensis; type=EST; length=427bp
CCTCATCGCAACTTTTCTGAAGAAGTTTCTGTCCTTGATAGCTATTTTGG
GAAGCTTGTTTCAGGAAGCAATGCATACATAATTGGTGGGTCAGGCAAGC
CACAGAAATGGCATGTATACTCTGCATCTGCAGAACCACTGATCTCTAGT
GACCCTGTTTTCACCATAGAGATGTGCTTGACTGGCCTGGATAGGGAAAT
GGCTTCTGTTTTCTACAAAACCCAATCAGGTTCAGCTGGTGCAATGACCG
TCAATTCTGGTATAAGAAAGATTCTTCCAGATTCCAAGATATGTGATTTT
GAGTTTGACCCTTGTGGTTATTCCATGAATTCTGTTGAAGGGGCTGCTAT
TTCTACTGTTCATGTTACTCCAGAGGATGGTTTCAGCTATGCCAGCTTTG
AAACAGTTGGTTATGATCCTAATGATG
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