CF504598 | Citrus Genome Database

Overview


Name	CF504598
Unique Name	CF504598
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	383

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10898	contig	Csv1_Contig10898:617..994.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SHIF8 (NAD-dependent malic enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ESCF3 (NAD-dependent malic enzyme OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOUT (NAD-dependent malic enzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=sfcA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOSM (NAD-dependent malic enzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLU (NAD-dependent malic enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLI (NAD-dependent malic enzyme OS=Escherichia coli (strain K12) GN=sfcA PE=3 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLC (NAD-dependent malic enzyme OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOL6 (NAD-dependent malic enzyme OS=Escherichia coli O6 GN=sfcA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOL5 (NAD-dependent malic enzyme OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECOK1 (NAD-dependent malic enzyme OS=Escherichia coli O1:K1 / APEC GN=sfcA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

The following BLAST results are available for this feature:

BLAST of CF504598 vs. ExPASy Swiss-Prot

BLAST of CF504598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137


Match Name	E-value	Identity	Description
MAO1_SHIF8	4.720e-15	51.67	NAD-dependent malic enzyme OS=Shigella flexneri se...	[more]
MAO1_ESCF3	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia ferguson...	[more]
MAO1_ECOUT	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOSM	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOLU	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O17...	[more]
MAO1_ECOLI	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOLC	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli (st...	[more]
MAO1_ECOL6	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O6 ...	[more]
MAO1_ECOL5	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O6:...	[more]
MAO1_ECOK1	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O1:...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-087 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504598 ID=CF504598; Name=CF504598; organism=Citrus sinensis; type=EST; length=383bp
GGCATTCGTCCCTCAGCATGTTTGCCCATAACCGTTGATGTGGGTACAAA
CAATGAGCAATTGTTGAAGGATGAATTCTACATTGGTCTACGACAGAGGA
GGGCAACCGGACAGGAATATGCTGAACTTCTAGATGAATTCATGAGTGCT
GTCAAGCAAAATTATGGAGAAAAAGTTCTTATACAGGTTAGTTTGAGGAT
TTCGCAAACCACAATGCTTTTGAGTTGCTTGCAAAATATGGCACAACTCA
TCTTGTCTTCAATGATGATATACAGCGTCTGTTGTTCTTGCTGGGGTAGT
TGCAGCACTGAAGTTGATTGGTGGCACACTGGCCGAGCATAGATTTTTGT
TTCTTGGAGCTGGGGAGGCTGGGACTGGTATAG