CF504598 | Citrus Genome Database

Overview


Name	CF504598
Unique Name	CF504598
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	383

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10898	contig	Csv1_Contig10898:617..994.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECO27 (NAD-dependent malic enzyme OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_ECO24 (NAD-dependent malic enzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.720e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 4.720e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_CITK8 (NAD-dependent malic enzyme OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sfcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.134e-15
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 32.7278 bits (73), Expect = 6.134e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRDEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO12_PHOPR (NAD-dependent malic enzyme 2 OS=Photobacterium profundum GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.346e-14
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNY 165
            GI P+  LPI +DVGTNN QLL D  Y+G R  R TGQEY + ++EF+ AVK  +
Sbjct:  181 GINPANTLPIVLDVGTNNTQLLSDPMYMGWRHPRITGQEYDDFVEEFIQAVKSRW 235

HSP 2 Score: 33.113 bits (74), Expect = 1.346e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  242 FEDFAQKNAMPLLNRYKDKVCCFNDDIQ 269

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SHIBS (NAD-dependent malic enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=sfcA PE=3 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R    EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRIIDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R    EY E +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRIIDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.113 bits (74), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SALTY (NAD-dependent malic enzyme OS=Salmonella typhimurium GN=sfcA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SALTI (NAD-dependent malic enzyme OS=Salmonella typhi GN=sfcA PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SALSV (NAD-dependent malic enzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=sfcA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

[Close]

BLAST of CF504598 vs. ExPASy Swiss-Prot
Match: MAO1_SALPB (NAD-dependent malic enzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=sfcA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.271e-14
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:    1 GIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 180
            GI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  184 GISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 2.271e-14
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  192 FEDFANHNAFELLAKYGTTHLVFNDDIQ 275
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

The following BLAST results are available for this feature:

BLAST of CF504598 vs. ExPASy Swiss-Prot

BLAST of CF504598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137


Match Name	E-value	Identity	Description
MAO1_ECO27	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O12...	[more]
MAO1_ECO24	4.720e-15	51.67	NAD-dependent malic enzyme OS=Escherichia coli O13...	[more]
MAO1_CITK8	6.134e-15	51.67	NAD-dependent malic enzyme OS=Citrobacter koseri (...	[more]
MAO12_PHOPR	1.346e-14	54.55	NAD-dependent malic enzyme 2 OS=Photobacterium pro...	[more]
MAO1_SHIBS	2.271e-14	50.00	NAD-dependent malic enzyme OS=Shigella boydii sero...	[more]
MAO1_SHIB3	2.271e-14	50.00	NAD-dependent malic enzyme OS=Shigella boydii sero...	[more]
MAO1_SALTY	2.271e-14	50.00	NAD-dependent malic enzyme OS=Salmonella typhimuri...	[more]
MAO1_SALTI	2.271e-14	50.00	NAD-dependent malic enzyme OS=Salmonella typhi GN=...	[more]
MAO1_SALSV	2.271e-14	50.00	NAD-dependent malic enzyme OS=Salmonella schwarzen...	[more]
MAO1_SALPB	2.271e-14	50.00	NAD-dependent malic enzyme OS=Salmonella paratyphi...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-087 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504598 ID=CF504598; Name=CF504598; organism=Citrus sinensis; type=EST; length=383bp
GGCATTCGTCCCTCAGCATGTTTGCCCATAACCGTTGATGTGGGTACAAA
CAATGAGCAATTGTTGAAGGATGAATTCTACATTGGTCTACGACAGAGGA
GGGCAACCGGACAGGAATATGCTGAACTTCTAGATGAATTCATGAGTGCT
GTCAAGCAAAATTATGGAGAAAAAGTTCTTATACAGGTTAGTTTGAGGAT
TTCGCAAACCACAATGCTTTTGAGTTGCTTGCAAAATATGGCACAACTCA
TCTTGTCTTCAATGATGATATACAGCGTCTGTTGTTCTTGCTGGGGTAGT
TGCAGCACTGAAGTTGATTGGTGGCACACTGGCCGAGCATAGATTTTTGT
TTCTTGGAGCTGGGGAGGCTGGGACTGGTATAG