CF504605

Overview
NameCF504605
Unique NameCF504605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_SHEWM (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=pckA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.395e-27
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTA 302
            IDLS++ EP IWNAI+FG VLENVV DE+ R  DY++ ++TEN+RAAYP+E+I   K    G  P  V+ L CD  GVLPPVS L   Q  YHF+SGYTA
Sbjct:  262 IDLSQKNEPVIWNAIRFGTVLENVVMDEN-RIPDYTNSTLTENSRAAYPLEHIELRKAENRGAEPHAVVFLTCDVSGVLPPVSILTKEQAAYHFLSGYTA 360          

HSP 2 Score: 28.1054 bits (61), Expect = 1.395e-27
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  338 ATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            +TFS CFGA F       YA +L ++++  G
Sbjct:  375 STFSTCFGAPFFPRPAGVYAELLMKRIESFG 405          
BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_PSEFS (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas fluorescens (strain SBW25) GN=pckA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.363e-27
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            IDLS + EP IW AIK GAVLENVV D+  +  DY++ S+T+N+RAAYP+E++       +G  P  VI L CD  GVLPPVS L+  Q  YHF+SGYTAL+
Sbjct:  262 IDLSEKNEPVIWKAIKHGAVLENVVIDD-AKHADYTNVSLTQNSRAAYPLEHVAKRSEKNLGGEPNAVIFLTCDLTGVLPPVSILSEEQAAYHFLSGYTALV 362          

HSP 2 Score: 30.0314 bits (66), Expect = 2.363e-27
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 2
Query:  308 GTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            G+  GIK   +TFS CFGA F      +YA +L ++++  G
Sbjct:  368 GSGGGIK---STFSTCFGAPFFPRPAGEYAELLIKRIRGFG 405          
BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_BAUCH (Phosphoenolpyruvate carboxykinase [ATP] OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pckA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.002e-27
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPC-VGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+L  E EP+I+ AI+  A+LENV+       V+Y D S T+N R +YP+ +I N   P     H   +I L  DAFGVLPPV+ L   Q  Y+F+SG++A L
Sbjct:  288 INLKPELEPEIFQAIRCNALLENVMV-RADGSVNYHDNSKTDNARVSYPLNHIKNRVQPVSCASHASTIIFLTADAFGVLPPVATLTNEQAQYYFLSGFSAKL 389          

HSP 2 Score: 58.151 bits (139), Expect = 4.002e-27
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 2
Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            +GTE GI  P  TFSACFGAAF+ LHPT YAA+LA++M   G
Sbjct:  390 SGTERGIISPVPTFSACFGAAFLALHPTVYAALLAKRMNIAG 431          
BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_PSEHT (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=pckA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.536e-26
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTA 302
            IDLS++ EP IW+AI+FG +LENVV DE+ R  D++D S+T+N+RAAYP+E++   K+      PK V+ L CD  GVLPPVS L      +HF+SGYTA
Sbjct:  261 IDLSQKNEPVIWDAIRFGTILENVVLDEN-RVPDFNDTSLTQNSRAAYPLEHVEKRKVENRAGEPKAVVFLTCDVSGVLPPVSILTEEAAAFHFLSGYTA 359          

HSP 2 Score: 28.1054 bits (61), Expect = 2.536e-26
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 2
Query:  338 ATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            +TFS CFGA F       YA +L +++++ G
Sbjct:  374 STFSTCFGAPFFPRPAGVYAELLMKRVREFG 404          
The following BLAST results are available for this feature:
BLAST of CF504605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_SHEWM1.395e-2758.00Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_PSEFS2.363e-2754.90Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_BAUCH4.002e-2743.69Phosphoenolpyruvate carboxykinase [ATP] OS=Baumann... [more]
PCKA_PSEHT2.536e-2653.00Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudoa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-094 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504605 ID=CF504605; Name=CF504605; organism=Citrus sinensis; type=EST; length=431bp
GCATTGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAG
TTTGGCGCTGTGTTGGAAAATGTCGTGTTTGATGAGCATACCAGAGAGGT
GGATTATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCA
TTGAGTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAG
AATGTCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACCAGTGAG
CAAGCTGAACCTGGCACAAACAATGTACCATTTCATCAGTGGCTACACTG
CTTTGCTGGAACAGAGGATGGTATTAAGGAGCCAACGGCAACATTTTCAG
CTTGCTTTGGTGCAGCATTTATCATGCTGCATCCTACCAAGTATGCAGCA
ATGCTGGCTGAGAAGATGCAGAAGCATGGTG
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