CF504613

Overview
NameCF504613
Unique NameCF504613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.577e-33
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E+ N GK Y  +  +++   ++ L Y  GWADKI G T+P DGN+   T HEPIGV GQI+PWNFPL+
Sbjct:  103 LATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLV 174          

HSP 2 Score: 77.7962 bits (190), Expect = 1.577e-33
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ D+ SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE+
Sbjct:   17 KIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIER 98          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.484e-33
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E+ N GK Y  +  +++   ++ L Y  GWADKI G T+P DGN+   T HEPIGV GQI+PWNFPL+
Sbjct:  103 LATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLV 174          

HSP 2 Score: 76.6406 bits (187), Expect = 3.484e-33
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   29 ASAGLAQLLLLKSQSFHLFKLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            +S+G + L +L +      K+   K  IN ++ D+ SGK FPV++P T E +  V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE+
Sbjct:    2 SSSGTSDLPVLPTD----LKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIER 98          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.305e-32
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E+ N GK +  +   ++   ++ L Y  GWADKI G T+P DGN+   T HEP+GV GQI+PWNFPLL
Sbjct:  102 LATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLL 173          

HSP 2 Score: 76.6406 bits (187), Expect = 1.305e-32
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  101 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K  IN ++ D+ SGK FPV++P T E +  V EGD ED+++AVA AR+AF  G PW  M   ER R++ + ADL+E+
Sbjct:   21 KIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVER 97          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 6.366e-32
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E  N GK +  +  S++   ++ L Y  GWADKIHG T+P DG+    T  EPIGV GQI+PWNFPLL
Sbjct:  103 LATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNFPLL 174          

HSP 2 Score: 75.485 bits (184), Expect = 6.366e-32
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ D+ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E+
Sbjct:   17 KIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMER 98          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.290e-32
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E+ N GK +  +   +V + ++ L Y+ GWADKIHG T+P DGN    T  EPIGV GQI+PWN PL+
Sbjct:  103 LATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLI 174          

HSP 2 Score: 73.1738 bits (178), Expect = 8.290e-32
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ D+ S K FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E+
Sbjct:   17 KIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMER 98          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.406e-31
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E  + GK +  +   ++   ++ + Y  GWADKIHG TVP DGN+   T HEP+GV GQI+PWNFPL+
Sbjct:  111 LATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLV 182          

HSP 2 Score: 74.7146 bits (182), Expect = 1.406e-31
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ D+ SGK F V++P   E I  VAEGD  DID+AV  ARKAF+ G PW  M   ER R++ + ADL+E+
Sbjct:   25 KIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVER 106          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 82.8037 bits (203), Expect = 1.406e-31
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA +E  N GK +  +  S++   ++ L Y  GWADKIHG T+P DG+    T  EPIGV GQI+PWNFP+L
Sbjct:  103 LATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPML 174          

HSP 2 Score: 73.559 bits (179), Expect = 1.406e-31
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ ++ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E+
Sbjct:   17 KIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMER 98          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.384e-31
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  337 ELAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPL 552
            +L  LET +NGKP+  S   +  M  ++L YY G+ADKI G T+P DGN    T HEP+GV G I PWNFPL
Sbjct:   99 QLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGNVFCYTRHEPVGVVGAITPWNFPL 170          

HSP 2 Score: 70.0922 bits (170), Expect = 2.384e-31
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFD-EGPWPKMTPYERSRIMLRAADLIE 325
            K+   K  IN +FVD+ SGKTF   +P T E +A V EGD  DID+AVA AR AF  +  + K    +R R++ + ADLIE
Sbjct:   14 KVEFTKIFINNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIE 94          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1
Query:  325 ENMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            ++ EELA+LETW+NGKPY QSL +E+PM  RL  YY GWADKIHGLT+P DGNY + TLHEPIGVAGQI+PWNFPLL
Sbjct:  134 KHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLL 210          

HSP 2 Score: 125.176 bits (313), Expect = 2.131e-28
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  107 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEK---TWRSWQLWRHG-------TMESPMYNLSNLKYQWW 412
            LING FVD+ASGKTFP  DPRT EVIA+VAEGDAEDI+RAV  AR AFDEGPWPKM+ YERSR++LR ADL+EK      S + W +G       T E PM+      Y  W
Sbjct:   61 LINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGW 172          
BLAST of CF504613 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.854e-31
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   86 KLVTPKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEK 328
            K+   K  IN ++ D+ SGKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE+
Sbjct:   17 KIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIER 98          

HSP 2 Score: 77.0258 bits (188), Expect = 6.854e-31
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  340 LAALETWNNGKPYVQSLKSEVPMVVRLLHYYLGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLL 555
            LA LE+ N GK +  +   ++   +++L Y  GWADKI G T+P DG +   T HEPIGV GQI PWN P++
Sbjct:  103 LATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGQIFPWNAPMI 174          
The following BLAST results are available for this feature:
BLAST of CF504613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
AL1A1_HUMAN1.577e-3351.39Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_MACFA3.484e-3351.39Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE1.305e-3250.00Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RAT6.366e-3251.39Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A7_MOUSE8.290e-3250.00Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_CHICK1.406e-3148.61Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_MOUSE1.406e-3150.00Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALDH_ENCBU2.384e-3152.78Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL2B4_ARATH4.650e-3174.03Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
ALDH1_MACPR6.854e-3147.56Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-102 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504613 ID=CF504613; Name=CF504613; organism=Citrus sinensis; type=EST; length=555bp
CTTGGTAGGGAGTCTAGCAGGGCAAGAGGCATCAGCAGGTTTAGCACAGC
TGCTGTTGTTGAAGAGCCAATCATTCCACCTGTTCAAATTAGTTACACCT
AAGAATTTAATAAATGGCCAATTTGTAGACGCAGCATCAGGCAAAACATT
TCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAATGTTGCTGAAG
GAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTCGCAAGGCATTT
GATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGGTCAAGGATTAT
GTTGCGGGCTGCTGACTTGATTGAGAAAACATGGAGGAGCTGGCAGCTTT
GGAGACATGGAACAATGGAAAGCCCTATGTACAATCTCTCAAATCTGAAG
TACCAATGGTGGTTCGCCTGTTGCACTATTATCTTGGATGGGCTGATAAA
ATCCACGGACTAACTGTCCCTGGTGATGGAAATTACCATATTCAAACTTT
ACATGAACCAATTGGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTC
TTCTC
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