CF504624

Overview
NameCF504624
Unique NameCF504624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: Y2070_DICDI (Probable serine/threonine-protein kinase DDB_G0277449 OS=Dictyostelium discoideum GN=DDB_G0277449 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   89 VGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            + L +F +  +VG+G F KV+QV  + T ++YA+KV++K+ I+ K       +E++IL K+ HPFIV L Y+FQ    LY
Sbjct:  123 INLSNFIIKHLVGKGGFGKVFQVVHVDTQKVYALKVIKKNHIIAKKSVVNTLAEKDILKKISHPFIVNLHYAFQNEKKLY 202          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A5_HUMAN (Ribosomal protein S6 kinase alpha-5 OS=Homo sapiens GN=RPS6KA5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 2
Query:   65 NLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKV-DHPFIVQLRYSFQVMSYLY 328
            NL    E VG+E+FE+LKV+G GA+ KV+ VR+I    T ++YAMKV++K  I++K    E+ ++ER +L  +   PF+V L Y+FQ  + L+
Sbjct:   36 NLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLH 128          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KN8R_YEAST (Probable serine/threonine-protein kinase YNR047W OS=Saccharomyces cerevisiae GN=YNR047W PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   89 VGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            VG + FE ++++GQG   KV+ VR   T  +YA+KV+ KD+++++N  + + +E+ IL   +HPFIV L +SFQ   YLY
Sbjct:  491 VGPQSFEKIRLLGQGDVGKVFLVREKKTNRVYALKVLSKDEMIKRNKIKRVLTEQEILATSNHPFIVTLYHSFQSEDYLY 570          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KAPCB_RAT (cAMP-dependent protein kinase catalytic subunit beta OS=Rattus norvegicus GN=Prkacb PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   62 DNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +N P  N   GLEDFE  K +G G+F +V  V+   T + YAMK++ K K+++    E+  +E+ IL  V+ PF+V+L YSF+  S LY
Sbjct:   32 ENPPPSN--AGLEDFERKKTLGTGSFGRVMLVKHKATEQYYAMKILDKQKVVKLKQIEHTLNEKRILQAVEFPFLVRLEYSFKDNSNLY 118          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KAPCB_MOUSE (cAMP-dependent protein kinase catalytic subunit beta OS=Mus musculus GN=Prkacb PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   62 DNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +N P  N   GLEDFE  K +G G+F +V  V+   T + YAMK++ K K+++    E+  +E+ IL  V+ PF+V+L YSF+  S LY
Sbjct:   32 ENPPPSN--AGLEDFERKKTLGTGSFGRVMLVKHKATEQYYAMKILDKQKVVKLKQIEHTLNEKRILQAVEFPFLVRLEYSFKDNSNLY 118          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KAPCB_CRIGR (cAMP-dependent protein kinase catalytic subunit beta OS=Cricetulus griseus GN=PRKACB PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   62 DNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +N P  N   GLEDFE  K +G G+F +V  V+   T + YAMK++ K K+++    E+  +E+ IL  V+ PF+V+L YSF+  S LY
Sbjct:   32 ENPPPSN--AGLEDFERKKTLGTGSFGRVMLVKHKATEQYYAMKILDKQKVVKLKQIEHTLNEKRILQAVEFPFLVRLEYSFKDNSNLY 118          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6B1_RAT (Ribosomal protein S6 kinase beta-1 OS=Rattus norvegicus GN=Rps6kb1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            E FE+L+V+G+G + KV+QVR++    T +I+AMKV++K  I+       + K+ERNIL +V HPFIV L Y+FQ    LY   + LS
Sbjct:   89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLS 176          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6B1_RABIT (Ribosomal protein S6 kinase beta-1 OS=Oryctolagus cuniculus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            E FE+L+V+G+G + KV+QVR++    T +I+AMKV++K  I+       + K+ERNIL +V HPFIV L Y+FQ    LY   + LS
Sbjct:   89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLS 176          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6B1_MOUSE (Ribosomal protein S6 kinase beta-1 OS=Mus musculus GN=Rps6kb1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            E FE+L+V+G+G + KV+QVR++    T +I+AMKV++K  I+       + K+ERNIL +V HPFIV L Y+FQ    LY   + LS
Sbjct:   89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLS 176          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6B1_HUMAN (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            E FE+L+V+G+G + KV+QVR++    T +I+AMKV++K  I+       + K+ERNIL +V HPFIV L Y+FQ    LY   + LS
Sbjct:   89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLS 176          
The following BLAST results are available for this feature:
BLAST of CF504624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
Y2070_DICDI4.993e-1241.25Probable serine/threonine-protein kinase DDB_G0277... [more]
KS6A5_HUMAN4.993e-1243.01Ribosomal protein S6 kinase alpha-5 OS=Homo sapien... [more]
KN8R_YEAST4.993e-1242.50Probable serine/threonine-protein kinase YNR047W O... [more]
KAPCB_RAT4.993e-1241.57cAMP-dependent protein kinase catalytic subunit be... [more]
KAPCB_MOUSE4.993e-1241.57cAMP-dependent protein kinase catalytic subunit be... [more]
KAPCB_CRIGR4.993e-1241.57cAMP-dependent protein kinase catalytic subunit be... [more]
KS6B1_RAT6.521e-1245.45Ribosomal protein S6 kinase beta-1 OS=Rattus norve... [more]
KS6B1_RABIT6.521e-1245.45Ribosomal protein S6 kinase beta-1 OS=Oryctolagus ... [more]
KS6B1_MOUSE6.521e-1245.45Ribosomal protein S6 kinase beta-1 OS=Mus musculus... [more]
KS6B1_HUMAN6.521e-1245.45Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-113 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504624 ID=CF504624; Name=CF504624; organism=Citrus sinensis; type=EST; length=643bp
GGAAGGGCCTAACAACCTATCTGTTGTTGATGCTGCCCTGGGGAAACCTA
CCGGGCACATAGATAATCTTCCTTCTGAAAACGAGTGTGTAGGACTTGAA
GATTTTGAGGTTTTGAAGGTTGTTGGCCAAGGTGCTTTTGCAAAAGTATA
CCAGGTGAGGAGGATCGGTACTTTAGAAATTTATGCAATGAAGGTCATGC
GCAAGGACAAGATTATGGAGAAAAATCATGCGGAATACATGAAATCTGAG
AGGAATATACTGACGAAAGTAGATCACCCCTTCATTGTGCAGCTCAGATA
CTCATTTCAAGTAATGTCTTATCTTTATCACACATAAGATGTTTTGTCTT
TTTAACCCTGCACCGGACTATGTGAATTCCATGCACTTTGCTTTGCCTTC
ATGATTCAGTTAATTAGTTAGTGATCTCAAGATTAGTTTGATCATGATAG
CAGATTTCCATTGCCCTACTTATGGAGCTTTGCATATTGTATACAGCAGT
TATATAAATTAATCTGTTCTGCAGACCAAATATAGACTGTACCTTGTGCT
TGATTTTGTCAATGGCGGCCACCTTTTCTTTCAGCTCTATCGCCAAGGCT
TGTTCAGGGAGGATTTGGCACGTATATATACTGCTGAGATTGT
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