CF504624

Overview
NameCF504624
Unique NameCF504624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6B1_BOVIN (Ribosomal protein S6 kinase beta-1 OS=Bos taurus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            E FE+L+V+G+G + KV+QVR++    T +I+AMKV++K  I+       + K+ERNIL +V HPFIV L Y+FQ    LY   + LS
Sbjct:   89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLS 176          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: CTRO_HUMAN (Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +DFEV  +VG G FA+V  VR   T +IYAMKVM+K  ++ +    + + ERNIL++   P+I QL+Y+FQ  ++LY
Sbjct:   95 KDFEVRSLVGCGHFAEVQVVREKATGDIYAMKVMKKKALLAQEQVSFFEEERNILSRSTSPWIPQLQYAFQDKNHLY 171          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: DMPK_MOUSE (Myotonin-protein kinase OS=Mus musculus GN=Dmpk PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +DFE+LKV+G+GAF++V  V+   T ++YAMK+M K  ++++      + ER++L K D  +I QL ++FQ  +YLY
Sbjct:   69 DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVKGDRRWITQLHFAFQDENYLY 145          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SGK3_PONAB (Serine/threonine-protein kinase Sgk3 OS=Pongo abelii GN=SGK3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTK-VDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            PS N      DF+ LKV+G+G+F KV   +R    + YA+KV++K  ++ +   +++ +ERN+L K V HPF+V L YSFQ    LY   D ++
Sbjct:  151 PSGNPHAKPTDFDFLKVIGKGSFGKVLLAKRKLDGKFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN 244          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SGK3_HUMAN (Serine/threonine-protein kinase Sgk3 OS=Homo sapiens GN=SGK3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTK-VDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            PS N      DF+ LKV+G+G+F KV   +R    + YA+KV++K  ++ +   +++ +ERN+L K V HPF+V L YSFQ    LY   D ++
Sbjct:  151 PSGNPHAKPTDFDFLKVIGKGSFGKVLLAKRKLDGKFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN 244          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SCK1_SCHPO (Serine/threonine-protein kinase sck1 OS=Schizosaccharomyces pombe GN=sck1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   92 GLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKV---DHPFIVQLRYSFQVMSYLYHT*DVLS 349
            G EDF  L+++G+G F +VY VR+  T  IYAMK + K  I+ K    +   ERNIL +    + PFIV L++SFQ  S LY   D +S
Sbjct:  298 GPEDFTALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTSLDESPFIVGLKFSFQTASDLYLITDYMS 386          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ROCK1_RAT (Rho-associated protein kinase 1 OS=Rattus norvegicus GN=Rock1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            ED+EV+KV+G+GAF +V  VR   T ++YAMK++ K ++++++ + +   ER+I+   + P++VQL Y+FQ   YLY
Sbjct:   74 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 150          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ROCK1_RABIT (Rho-associated protein kinase 1 OS=Oryctolagus cuniculus GN=ROCK1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            ED+EV+KV+G+GAF +V  VR   T ++YAMK++ K ++++++ + +   ER+I+   + P++VQL Y+FQ   YLY
Sbjct:   74 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 150          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ROCK1_MOUSE (Rho-associated protein kinase 1 OS=Mus musculus GN=Rock1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            ED+EV+KV+G+GAF +V  VR   T ++YAMK++ K ++++++ + +   ER+I+   + P++VQL Y+FQ   YLY
Sbjct:   74 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 150          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ROCK1_HUMAN (Rho-associated protein kinase 1 OS=Homo sapiens GN=ROCK1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            ED+EV+KV+G+GAF +V  VR   T ++YAMK++ K ++++++ + +   ER+I+   + P++VQL Y+FQ   YLY
Sbjct:   74 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 150          
The following BLAST results are available for this feature:
BLAST of CF504624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
KS6B1_BOVIN6.521e-1245.45Ribosomal protein S6 kinase beta-1 OS=Bos taurus G... [more]
CTRO_HUMAN6.521e-1245.45Citron Rho-interacting kinase OS=Homo sapiens GN=C... [more]
DMPK_MOUSE8.516e-1241.56Myotonin-protein kinase OS=Mus musculus GN=Dmpk PE... [more]
SGK3_PONAB1.112e-1139.36Serine/threonine-protein kinase Sgk3 OS=Pongo abel... [more]
SGK3_HUMAN1.112e-1139.36Serine/threonine-protein kinase Sgk3 OS=Homo sapie... [more]
SCK1_SCHPO1.112e-1143.82Serine/threonine-protein kinase sck1 OS=Schizosacc... [more]
ROCK1_RAT1.112e-1141.56Rho-associated protein kinase 1 OS=Rattus norvegic... [more]
ROCK1_RABIT1.112e-1141.56Rho-associated protein kinase 1 OS=Oryctolagus cun... [more]
ROCK1_MOUSE1.112e-1141.56Rho-associated protein kinase 1 OS=Mus musculus GN... [more]
ROCK1_HUMAN1.112e-1141.56Rho-associated protein kinase 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-113 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504624 ID=CF504624; Name=CF504624; organism=Citrus sinensis; type=EST; length=643bp
GGAAGGGCCTAACAACCTATCTGTTGTTGATGCTGCCCTGGGGAAACCTA
CCGGGCACATAGATAATCTTCCTTCTGAAAACGAGTGTGTAGGACTTGAA
GATTTTGAGGTTTTGAAGGTTGTTGGCCAAGGTGCTTTTGCAAAAGTATA
CCAGGTGAGGAGGATCGGTACTTTAGAAATTTATGCAATGAAGGTCATGC
GCAAGGACAAGATTATGGAGAAAAATCATGCGGAATACATGAAATCTGAG
AGGAATATACTGACGAAAGTAGATCACCCCTTCATTGTGCAGCTCAGATA
CTCATTTCAAGTAATGTCTTATCTTTATCACACATAAGATGTTTTGTCTT
TTTAACCCTGCACCGGACTATGTGAATTCCATGCACTTTGCTTTGCCTTC
ATGATTCAGTTAATTAGTTAGTGATCTCAAGATTAGTTTGATCATGATAG
CAGATTTCCATTGCCCTACTTATGGAGCTTTGCATATTGTATACAGCAGT
TATATAAATTAATCTGTTCTGCAGACCAAATATAGACTGTACCTTGTGCT
TGATTTTGTCAATGGCGGCCACCTTTTCTTTCAGCTCTATCGCCAAGGCT
TGTTCAGGGAGGATTTGGCACGTATATATACTGCTGAGATTGT
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