CF504624

Overview
NameCF504624
Unique NameCF504624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A5_PONAB (Ribosomal protein S6 kinase alpha-5 OS=Pongo abelii GN=RPS6KA5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   65 NLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKV-DHPFIVQLRYSFQVMSYLY 328
            NL    E VG+E+FE+LKV+G GA+ KV+ VR+I    T ++YAMKV++K  I++K    E+ ++ER +L      PF+V L Y+FQ  + L+
Sbjct:   36 NLTGHAERVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHTRQSPFLVTLHYAFQTETKLH 128          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A3_MOUSE (Ribosomal protein S6 kinase alpha-3 OS=Mus musculus GN=Rps6ka3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG+F KV+ V++I      ++YAMKV++K  +  ++     K ER+IL +V+HPFIV+L Y+FQ    LY   D L
Sbjct:   68 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVR-TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFL 150          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A3_HUMAN (Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens GN=RPS6KA3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG+F KV+ V++I      ++YAMKV++K  +  ++     K ER+IL +V+HPFIV+L Y+FQ    LY   D L
Sbjct:   68 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVR-TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFL 150          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ST32B_MOUSE (Serine/threonine-protein kinase 32B OS=Mus musculus GN=Stk32b PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   38 LGKPTGHIDNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            +G    H   +  ENE V  + F++L+ +G+G+F KV  V++  T ++YAMK M K K +E++    +  E  I+  ++HPF+V L YSFQ    ++   D+L
Sbjct:    1 MGGNHSHKPPVFDENEEVNFDHFQILRAIGKGSFGKVCIVQKRDTKKMYAMKYMNKQKCVERDEVRNVFRELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLL 103          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: ST32B_HUMAN (Serine/threonine-protein kinase 32B OS=Homo sapiens GN=STK32B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   38 LGKPTGHIDNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            +G    H   +  ENE V  + F++L+ +G+G+F KV  V++  T ++YAMK M K K +E++    +  E  I+  ++HPF+V L YSFQ    ++   D+L
Sbjct:    1 MGGNHSHKPPVFDENEEVNFDHFQILRAIGKGSFGKVCIVQKRDTKKMYAMKYMNKQKCIERDEVRNVFRELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLL 103          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A6_DANRE (Ribosomal protein S6 kinase alpha-6 OS=Danio rerio GN=rps6ka6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG+F KV+ VR++      ++YAMKV++K  +  ++     K ER+IL +V+HPFIV+L Y+FQ    LY   D L
Sbjct:   67 FELLKVLGQGSFGKVFLVRKLMGPDAGQLYAMKVLKKASLKVRDRVR-TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFL 149          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A1_MOUSE (Ribosomal protein S6 kinase alpha-1 OS=Mus musculus GN=Rps6ka1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 2
Query:   29 DAALGKPTGHIDNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLE---IYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            D A+ K      ++ + +E      FE+LKV+GQG+F KV+ VR++   +   +YAMKV++K  +  ++     K ER+IL  V+HPF+V+L Y+FQ    LY   D L
Sbjct:   37 DEAILKEISITHHVKAGSEKADPSQFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVR-TKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFL 144          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A1_CAEEL (Putative ribosomal protein S6 kinase alpha-1 OS=Caenorhabditis elegans GN=rskn-1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRIGTLE---IYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG+F KV+ VR++   +   +YAMKV++K  +  ++  +  K ERNIL  + HPFIV+L Y+FQ    LY   D L
Sbjct:  104 FELLKVLGQGSFGKVFLVRKVRGRDSGHVYAMKVLKKATLKVRDR-QRTKLERNILAHISHPFIVKLHYAFQTEGKLYLILDFL 186          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KAPCB_HUMAN (cAMP-dependent protein kinase catalytic subunit beta OS=Homo sapiens GN=PRKACB PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            P++N   GLEDFE  K +G G+F +V  V+   T + YAMK++ K K+++    E+  +E+ IL  V+ PF+V+L Y+F+  S LY
Sbjct:   34 PTQNNA-GLEDFERKKTLGTGSFGRVMLVKHKATEQYYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVRLEYAFKDNSNLY 118          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SGK3_RAT (Serine/threonine-protein kinase Sgk3 OS=Rattus norvegicus GN=Sgk3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTK-VDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            P+ N      DF+ LKV+G+G+F KV   +R    + YA+KV++K  ++ +   +++ +ERN+L K V HPF+V L YSFQ    LY   D ++
Sbjct:  151 PTGNPHAKPSDFDFLKVIGKGSFGKVLLAKRKLDGKFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN 244          
The following BLAST results are available for this feature:
BLAST of CF504624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
KS6A5_PONAB1.112e-1143.01Ribosomal protein S6 kinase alpha-5 OS=Pongo abeli... [more]
KS6A3_MOUSE1.112e-1145.24Ribosomal protein S6 kinase alpha-3 OS=Mus musculu... [more]
KS6A3_HUMAN1.112e-1145.24Ribosomal protein S6 kinase alpha-3 OS=Homo sapien... [more]
ST32B_MOUSE1.453e-1134.95Serine/threonine-protein kinase 32B OS=Mus musculu... [more]
ST32B_HUMAN1.453e-1134.95Serine/threonine-protein kinase 32B OS=Homo sapien... [more]
KS6A6_DANRE1.453e-1145.24Ribosomal protein S6 kinase alpha-6 OS=Danio rerio... [more]
KS6A1_MOUSE1.453e-1137.61Ribosomal protein S6 kinase alpha-1 OS=Mus musculu... [more]
KS6A1_CAEEL1.453e-1145.24Putative ribosomal protein S6 kinase alpha-1 OS=Ca... [more]
KAPCB_HUMAN1.453e-1140.70cAMP-dependent protein kinase catalytic subunit be... [more]
SGK3_RAT1.897e-1138.30Serine/threonine-protein kinase Sgk3 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-113 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504624 ID=CF504624; Name=CF504624; organism=Citrus sinensis; type=EST; length=643bp
GGAAGGGCCTAACAACCTATCTGTTGTTGATGCTGCCCTGGGGAAACCTA
CCGGGCACATAGATAATCTTCCTTCTGAAAACGAGTGTGTAGGACTTGAA
GATTTTGAGGTTTTGAAGGTTGTTGGCCAAGGTGCTTTTGCAAAAGTATA
CCAGGTGAGGAGGATCGGTACTTTAGAAATTTATGCAATGAAGGTCATGC
GCAAGGACAAGATTATGGAGAAAAATCATGCGGAATACATGAAATCTGAG
AGGAATATACTGACGAAAGTAGATCACCCCTTCATTGTGCAGCTCAGATA
CTCATTTCAAGTAATGTCTTATCTTTATCACACATAAGATGTTTTGTCTT
TTTAACCCTGCACCGGACTATGTGAATTCCATGCACTTTGCTTTGCCTTC
ATGATTCAGTTAATTAGTTAGTGATCTCAAGATTAGTTTGATCATGATAG
CAGATTTCCATTGCCCTACTTATGGAGCTTTGCATATTGTATACAGCAGT
TATATAAATTAATCTGTTCTGCAGACCAAATATAGACTGTACCTTGTGCT
TGATTTTGTCAATGGCGGCCACCTTTTCTTTCAGCTCTATCGCCAAGGCT
TGTTCAGGGAGGATTTGGCACGTATATATACTGCTGAGATTGT
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