CF504624

Overview
NameCF504624
Unique NameCF504624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SCK2_SCHPO (Serine/threonine-protein kinase sck2 OS=Schizosaccharomyces pombe GN=sck2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTK---VDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            P      G +DF  LK++G+G F +VY VR+  T  +YAMKV+ K  I+ +    +   ER+IL +    D PFIV LR+SFQ    LY   D ++
Sbjct:  255 PLSQHSYGPDDFVPLKLIGKGTFGQVYLVRKKDTERVYAMKVLSKKVIVRRKEVAHTVGERDILVQTSAADSPFIVALRFSFQTPKDLYLVTDYMA 350          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: NDRA_DICDI (Probable serine/threonine-protein kinase ndrA OS=Dictyostelium discoideum GN=ndrA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 30/76 (39.47%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  101 DFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            DFEV++++G+GAF +V  VR   + ++YAMK ++K ++++K  A ++++ER++L   +  ++V+L YSFQ  +YLY
Sbjct:  111 DFEVIRIIGRGAFGEVSLVRHRESNDLYAMKRLKKSEMLKKEQAAHVRAERDVLASANTNWVVKLYYSFQDDNYLY 186          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A5_MOUSE (Ribosomal protein S6 kinase alpha-5 OS=Mus musculus GN=Rps6ka5 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   65 NLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKV-DHPFIVQLRYSFQVMSYLY 328
            NL    E VG+E+FE+LKV+G GA+ KV+ VR+I      ++YAMKV++K  I++K    E+ ++ER +L  +   PF+V L Y+FQ  + L+
Sbjct:   35 NLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDAGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLH 127          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: SGK3_MOUSE (Serine/threonine-protein kinase Sgk3 OS=Mus musculus GN=Sgk3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   71 PSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTK-VDHPFIVQLRYSFQVMSYLYHT*DVLS 349
            P+ N      DF+ LKV+G+G+F KV   +R    + YA+KV++K  ++ +   +++ +ERN+L K V HPF+V L YSFQ    LY   D ++
Sbjct:  151 PTGNPHAKPTDFDFLKVIGKGSFGKVLLAKRKLDGKFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN 244          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: PDPK1_RAT (3-phosphoinositide-dependent protein kinase 1 OS=Rattus norvegicus GN=Pdpk1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 32/91 (35.16%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   56 HIDNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            H   LP +      EDF+  K++G+G+F+ V   R + T   YA+K++ K  I+++N   Y+  ER++++++DHPF V+L ++FQ    LY
Sbjct:   69 HPAQLPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY 159          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: PDPK1_MOUSE (3-phosphoinositide-dependent protein kinase 1 OS=Mus musculus GN=Pdpk1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 32/91 (35.16%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   56 HIDNLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            H   LP +      EDF+  K++G+G+F+ V   R + T   YA+K++ K  I+++N   Y+  ER++++++DHPF V+L ++FQ    LY
Sbjct:   69 HPAQLPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY 159          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6AA_CHICK (Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG+F KV+ VR+I    +  +YAMKV++K  +  ++     K ER+IL  V+HPF+V+L Y+FQ    LY   D L
Sbjct:   80 FELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVR-TKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFL 162          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A5_CHICK (Ribosomal protein S6 kinase alpha-5 OS=Gallus gallus GN=RPS6KA5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   65 NLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKV-DHPFIVQLRYSFQVMSYLY 328
            NL    E VG+E+FE+LKV+G GA+ KV+ VR++      ++YAMKV++K  I++K    E+ ++ER +L  +   PF+V L Y+FQ  + L+
Sbjct:   26 NLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKVSGHDAGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH 118          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A2_MOUSE (Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG++ KV+ VR++      ++YAMKV++K  +  ++     K ER+IL +V+HPFIV+L Y+FQ    LY   D L
Sbjct:   59 FELLKVLGQGSYGKVFLVRKVTGSDAGQLYAMKVLKKATLKVRDRVR-SKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL 141          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A2_HUMAN (Ribosomal protein S6 kinase alpha-2 OS=Homo sapiens GN=RPS6KA2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  104 FEVLKVVGQGAFAKVYQVRRI---GTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLYHT*DVL 346
            FE+LKV+GQG++ KV+ VR++      ++YAMKV++K  +  ++     K ER+IL +V+HPFIV+L Y+FQ    LY   D L
Sbjct:   59 FELLKVLGQGSYGKVFLVRKVKGSDAGQLYAMKVLKKATLKVRDRVR-SKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL 141          
The following BLAST results are available for this feature:
BLAST of CF504624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
SCK2_SCHPO1.897e-1139.58Serine/threonine-protein kinase sck2 OS=Schizosacc... [more]
NDRA_DICDI1.897e-1139.47Probable serine/threonine-protein kinase ndrA OS=D... [more]
KS6A5_MOUSE1.897e-1141.94Ribosomal protein S6 kinase alpha-5 OS=Mus musculu... [more]
SGK3_MOUSE2.478e-1138.30Serine/threonine-protein kinase Sgk3 OS=Mus muscul... [more]
PDPK1_RAT2.478e-1135.163-phosphoinositide-dependent protein kinase 1 OS=R... [more]
PDPK1_MOUSE2.478e-1135.163-phosphoinositide-dependent protein kinase 1 OS=M... [more]
KS6AA_CHICK3.236e-1145.24Ribosomal protein S6 kinase 2 alpha OS=Gallus gall... [more]
KS6A5_CHICK3.236e-1140.86Ribosomal protein S6 kinase alpha-5 OS=Gallus gall... [more]
KS6A2_MOUSE3.236e-1144.05Ribosomal protein S6 kinase alpha-2 OS=Mus musculu... [more]
KS6A2_HUMAN3.236e-1144.05Ribosomal protein S6 kinase alpha-2 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-113 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504624 ID=CF504624; Name=CF504624; organism=Citrus sinensis; type=EST; length=643bp
GGAAGGGCCTAACAACCTATCTGTTGTTGATGCTGCCCTGGGGAAACCTA
CCGGGCACATAGATAATCTTCCTTCTGAAAACGAGTGTGTAGGACTTGAA
GATTTTGAGGTTTTGAAGGTTGTTGGCCAAGGTGCTTTTGCAAAAGTATA
CCAGGTGAGGAGGATCGGTACTTTAGAAATTTATGCAATGAAGGTCATGC
GCAAGGACAAGATTATGGAGAAAAATCATGCGGAATACATGAAATCTGAG
AGGAATATACTGACGAAAGTAGATCACCCCTTCATTGTGCAGCTCAGATA
CTCATTTCAAGTAATGTCTTATCTTTATCACACATAAGATGTTTTGTCTT
TTTAACCCTGCACCGGACTATGTGAATTCCATGCACTTTGCTTTGCCTTC
ATGATTCAGTTAATTAGTTAGTGATCTCAAGATTAGTTTGATCATGATAG
CAGATTTCCATTGCCCTACTTATGGAGCTTTGCATATTGTATACAGCAGT
TATATAAATTAATCTGTTCTGCAGACCAAATATAGACTGTACCTTGTGCT
TGATTTTGTCAATGGCGGCCACCTTTTCTTTCAGCTCTATCGCCAAGGCT
TGTTCAGGGAGGATTTGGCACGTATATATACTGCTGAGATTGT
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