CF504632

Overview
NameCF504632
Unique NameCF504632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_PONAB (Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.894e-30
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            ++KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD
Sbjct:  156 MIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDD 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_HUMAN (Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.894e-30
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            ++KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD
Sbjct:  156 MIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDD 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_XENTR (Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.196e-30
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            +VK GITT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L+DGD +N+D+TVY +GYHGD + TF+ GDVD+
Sbjct:  156 MVKSGITTEEIDHAVHLACISRNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQDGDIVNVDITVYRDGYHGDLNETFYVGDVDE 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_XENLA (Methionine aminopeptidase 1 OS=Xenopus laevis GN=metap1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.196e-30
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            +VK GITT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L+DGD +N+D+TVY +GYHGD + TF+ GDVD+
Sbjct:  156 MVKSGITTEEIDHAVHLACISRNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQDGDIVNVDITVYRDGYHGDLNETFYVGDVDE 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_DANRE (Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.227e-29
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            +VKPG+TT+EID AVH        YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +NID+TVY NGYHGD + TFF G+VD+
Sbjct:  155 MVKPGVTTEEIDHAVHLACTARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRHLQEGDILNIDITVYHNGYHGDLNETFFVGEVDE 242          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_MOUSE (Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.603e-29
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            ++K G+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF GDVD+
Sbjct:  156 MIKAGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGDVDE 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_CHICK (Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.571e-29
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            +VK G+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+TVY NGYHGD + TF+ G+VD+
Sbjct:  156 MVKAGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITVYRNGYHGDLNETFYVGEVDE 243          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.772e-28
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            ++ PG+TTDEID+ VH+  I  G YPSPL Y  FPKS CTSVNE ICHGIPD+R LEDGD +N+DVTV   G HGD + T+F G+VD+
Sbjct:  167 VIHPGVTTDEIDRVVHEATIAAGGYPSPLNYYFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGCHGDLNETYFVGNVDE 254          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_SCHPO (Probable methionine aminopeptidase 1 OS=Schizosaccharomyces pombe GN=SPBC3E7.10 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.365e-27
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGD 263
            V+PG TTDE+D  VH   I+   +PS L Y  FPKSVCTSVNE ICHGIPD R LEDGD +NIDV++Y NG+HGD + T++ GD
Sbjct:  146 VRPGTTTDELDSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIPDQRPLEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_DICDI (Methionine aminopeptidase 1 OS=Dictyostelium discoideum GN=metap1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.725e-27
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            G   K G+TT+E+D  VH  +I+ GAYPSPL Y  FPKS CTS+NE ICHGIPD R L DGD +N+DVT+Y  G+H D + T+  G+VD+
Sbjct:  136 GNAAKVGMTTEELDIIVHNAVIERGAYPSPLNYYKFPKSCCTSLNEVICHGIPDERPLRDGDILNVDVTLYWKGFHSDLNETYLIGNVDE 225          
The following BLAST results are available for this feature:
BLAST of CF504632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AMPM1_PONAB1.894e-3063.64Methionine aminopeptidase 1 OS=Pongo abelii GN=MET... [more]
AMPM1_HUMAN1.894e-3063.64Methionine aminopeptidase 1 OS=Homo sapiens GN=MET... [more]
AMPM1_XENTR7.196e-3064.77Methionine aminopeptidase 1 OS=Xenopus tropicalis ... [more]
AMPM1_XENLA7.196e-3064.77Methionine aminopeptidase 1 OS=Xenopus laevis GN=m... [more]
AMPM1_DANRE1.227e-2964.77Methionine aminopeptidase 1 OS=Danio rerio GN=meta... [more]
AMPM1_MOUSE1.603e-2962.50Methionine aminopeptidase 1 OS=Mus musculus GN=Met... [more]
AMPM1_CHICK3.571e-2962.50Methionine aminopeptidase 1 OS=Gallus gallus GN=ME... [more]
AMP1A_ARATH1.772e-2862.50Methionine aminopeptidase 1A OS=Arabidopsis thalia... [more]
AMPM1_SCHPO4.365e-2761.90Probable methionine aminopeptidase 1 OS=Schizosacc... [more]
AMPM1_DICDI9.725e-2756.67Methionine aminopeptidase 1 OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-121 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504632 ID=CF504632; Name=CF504632; organism=Citrus sinensis; type=EST; length=277bp
CTGGGACTTTAGTTAAGCCAGGTATTACAACAGATGAAATTGACAAAGCA
GTTCATCAAATGATTATTGATAATGGAGCATATCCCTCACCTCTTGGCTA
TGGTGGGTTTCCAAAGAGTGTCTGTACATCAGTGAATGAATGTATCTGCC
ACGGAATACCGGATTCCCGTGCACTTGAGGATGGTGATACTATAAATATT
GATGTGACTGTTTATCTAAATGGTTATCATGGTGATACATCACCGACTTT
CTTTTGTGGAGATGTTGATGATGAAGC
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