CF504632

Overview
NameCF504632
Unique NameCF504632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_YEAST (Methionine aminopeptidase 1 OS=Saccharomyces cerevisiae GN=MAP1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.270e-26
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGD 263
            V+PGITTDE+D+ VH   I  GAYPSPL Y  FPKS+CTSVNE ICHG+PD   L++GD +N+DV++Y  GYH D + T++ G+
Sbjct:  156 VRPGITTDELDEIVHNETIKRGAYPSPLNYYNFPKSLCTSVNEVICHGVPDKTVLKEGDIVNLDVSLYYQGYHADLNETYYVGE 239          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_RICPR (Methionine aminopeptidase OS=Rickettsia prowazekii GN=map PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.242e-23
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDV 266
            VKP +TT+ ++   H  I  + A P+PL Y GFPKS+CTS+N  +CHGIP+ + L++GD +NIDVTV L+G++GDTS  ++ GDV
Sbjct:   32 VKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDV 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_SYNY3 (Putative methionine aminopeptidase A OS=Synechocystis sp. (strain PCC 6803) GN=slr0918 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.212e-22
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            +V+PGITT E++    +    +GA  +PLGY GFPKS+CTS+NE ICHGIP   R L+ GD IN+DVT  ++GYHGD S TFF G
Sbjct:   33 MVQPGITTLELNDEAEKWTKAHGAISAPLGYNGFPKSICTSINEVICHGIPHRKRVLQAGDIINVDVTPIVDGYHGDCSRTFFVG 117          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_BACSU (Methionine aminopeptidase 1 OS=Bacillus subtilis GN=map PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            +KPGI+T E+D+   + I   GA PS  GY GF  S+C SVNE + HGIP SR L+DGD I+ID+   LNGYHGD++ T+  G++ D+
Sbjct:   31 IKPGISTKELDQIAERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGYHGDSAWTYPVGNISDD 118          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_SHIFL (Methionine aminopeptidase OS=Shigella flexneri GN=map PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  +G+HGDTS  F  G
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_ECOLI (Methionine aminopeptidase OS=Escherichia coli (strain K12) GN=map PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  +G+HGDTS  F  G
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_ECOL6 (Methionine aminopeptidase OS=Escherichia coli O6 GN=map PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  +G+HGDTS  F  G
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_ECO57 (Methionine aminopeptidase OS=Escherichia coli O157:H7 GN=map PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.958e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  +G+HGDTS  F  G
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_SALTY (Methionine aminopeptidase OS=Salmonella typhimurium GN=map PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            +KPG+TT E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  + +HGDTS  F  G
Sbjct:   32 IKPGVTTGELDRICNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIKDEFHGDTSKMFIVG 116          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_SALTI (Methionine aminopeptidase OS=Salmonella typhi GN=map PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            +KPG+TT E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV  + +HGDTS  F  G
Sbjct:   32 IKPGVTTGELDRICNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIKDEFHGDTSKMFIVG 116          
The following BLAST results are available for this feature:
BLAST of CF504632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AMPM1_YEAST1.270e-2658.33Methionine aminopeptidase 1 OS=Saccharomyces cerev... [more]
AMPM_RICPR2.242e-2351.76Methionine aminopeptidase OS=Rickettsia prowazekii... [more]
AMPM1_SYNY37.212e-2256.47Putative methionine aminopeptidase A OS=Synechocys... [more]
AMPM1_BACSU1.776e-2051.14Methionine aminopeptidase 1 OS=Bacillus subtilis G... [more]
AMPM_SHIFL3.958e-2052.94Methionine aminopeptidase OS=Shigella flexneri GN=... [more]
AMPM_ECOLI3.958e-2052.94Methionine aminopeptidase OS=Escherichia coli (str... [more]
AMPM_ECOL63.958e-2052.94Methionine aminopeptidase OS=Escherichia coli O6 G... [more]
AMPM_ECO573.958e-2052.94Methionine aminopeptidase OS=Escherichia coli O157... [more]
AMPM_SALTY1.964e-1951.76Methionine aminopeptidase OS=Salmonella typhimuriu... [more]
AMPM_SALTI1.964e-1951.76Methionine aminopeptidase OS=Salmonella typhi GN=m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-121 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504632 ID=CF504632; Name=CF504632; organism=Citrus sinensis; type=EST; length=277bp
CTGGGACTTTAGTTAAGCCAGGTATTACAACAGATGAAATTGACAAAGCA
GTTCATCAAATGATTATTGATAATGGAGCATATCCCTCACCTCTTGGCTA
TGGTGGGTTTCCAAAGAGTGTCTGTACATCAGTGAATGAATGTATCTGCC
ACGGAATACCGGATTCCCGTGCACTTGAGGATGGTGATACTATAAATATT
GATGTGACTGTTTATCTAAATGGTTATCATGGTGATACATCACCGACTTT
CTTTTGTGGAGATGTTGATGATGAAGC
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