CF504632

Overview
NameCF504632
Unique NameCF504632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_STAEQ (Methionine aminopeptidase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=map PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 3
Query:   15 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVD 269
            KPG+TT E+D     +  ++GA  +P+    FP   C SVNE + HGIP  R + +GD +NIDV+   NGY+ DT  +F  G  D
Sbjct:   31 KPGVTTRELDHIAKDLFEEHGAISAPIHDENFPGQTCISVNEEVAHGIPGKRVIHEGDLVNIDVSALKNGYYADTGISFVVGKSD 115          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_MYCCT (Methionine aminopeptidase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=map PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.245e-14
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 3
Query:    6 TLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCG 260
            +++KPG+   ++DKA  + I  NG   +   Y GFPK++C S+N+ + HGIP  R L DGD ++ID       +H D++ T  CG
Sbjct:   29 SMIKPGVNCLDLDKAFEEFIKQNGCESNFKNYQGFPKTICISINDQLIHGIPRDRVLLDGDVVSIDAGCMYEKWHADSAFTMVCG 113          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM3_SYNY3 (Putative methionine aminopeptidase C OS=Synechocystis sp. (strain PCC 6803) GN=sll0555 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR-ALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            V+PG+TT ++D+   + I   GA PS  GY GFP S+C  VN  + HGIP  R  +  GD + +D   Y  GYHGD+  T   G V  +
Sbjct:   83 VQPGMTTGDLDQLAEERIRSLGATPSFKGYHGFPASICACVNNEVVHGIPRRRKKIRSGDLLKVDTGAYFQGYHGDSCITIAVGKVSPQ 171          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_HELPY (Methionine aminopeptidase OS=Helicobacter pylori GN=map PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.233e-13
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            V+PG++  E+DK     I  + A P+  G  GFP SVC S+NE + HGIP    L++GD I +D+ V ++GY+GD++ T   G +  +
Sbjct:   32 VRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQ 119          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_HELPJ (Methionine aminopeptidase OS=Helicobacter pylori J99 GN=map PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.233e-13
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   12 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            V+PG++  E+DK     I  + A P+  G  GFP SVC S+NE + HGIP    L++GD I +D+ V ++GY+GD++ T   G +  +
Sbjct:   32 VRPGVSLLELDKMAEDFIKSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQ 119          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_TREPA (Methionine aminopeptidase OS=Treponema pallidum GN=map PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.120e-13
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            LVKPG+ T E+D    + I   G  P+    G FP + C S+NE + HG+P +R ++DGD +++DV + LNGY  D   T   G V  E
Sbjct:   30 LVKPGVQTQELDAFCQRFIRSVGGVPAWFSEG-FPAAACISINEEVIHGLPSARVIQDGDLVSLDVGINLNGYISDACRTVPVGGVAHE 117          
The following BLAST results are available for this feature:
BLAST of CF504632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AMPM_STAEQ2.935e-1542.35Methionine aminopeptidase OS=Staphylococcus epider... [more]
AMPM_MYCCT3.245e-1438.82Methionine aminopeptidase OS=Mycoplasma capricolum... [more]
AMPM3_SYNY34.238e-1441.57Putative methionine aminopeptidase C OS=Synechocys... [more]
AMPM_HELPY1.233e-1339.77Methionine aminopeptidase OS=Helicobacter pylori G... [more]
AMPM_HELPJ1.233e-1339.77Methionine aminopeptidase OS=Helicobacter pylori J... [more]
AMPM_TREPA6.120e-1340.45Methionine aminopeptidase OS=Treponema pallidum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-121 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504632 ID=CF504632; Name=CF504632; organism=Citrus sinensis; type=EST; length=277bp
CTGGGACTTTAGTTAAGCCAGGTATTACAACAGATGAAATTGACAAAGCA
GTTCATCAAATGATTATTGATAATGGAGCATATCCCTCACCTCTTGGCTA
TGGTGGGTTTCCAAAGAGTGTCTGTACATCAGTGAATGAATGTATCTGCC
ACGGAATACCGGATTCCCGTGCACTTGAGGATGGTGATACTATAAATATT
GATGTGACTGTTTATCTAAATGGTTATCATGGTGATACATCACCGACTTT
CTTTTGTGGAGATGTTGATGATGAAGC
back to top