CF504635 | Citrus Genome Database

Overview


Name	CF504635
Unique Name	CF504635
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	746

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.615e-24
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSL
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSL 56

HSP 2 Score: 38.891 bits (89), Expect = 1.615e-24
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLF++PYK++IKTCGTTK
Sbjct:   70 SLFIFPYKIVIKTCGTTK 87

HSP 3 Score: 23.0978 bits (48), Expect = 1.615e-24
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+ LDSYVLSE
Sbjct:   56 LSNDQLDSYVLSE 68

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.717e-24
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + VSAIGFEGYEKRLEVSFFEP +F D  G+GLR+L K Q+DEIL PAECTIVSSL
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSL 56

HSP 2 Score: 39.2762 bits (90), Expect = 2.717e-24
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLF++PYK+IIKTCGTTK
Sbjct:   70 SLFIFPYKIIIKTCGTTK 87

HSP 3 Score: 23.0978 bits (48), Expect = 2.717e-24
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+ LDSYVLSE
Sbjct:   56 LSNDELDSYVLSE 68

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.605e-24
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSL 80

HSP 2 Score: 38.1206 bits (87), Expect = 4.605e-24
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   94 SLFVYSYKIIIKTCGTTK 111

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.015e-23
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK  LDEIL PAECTIV SL
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSL 71

HSP 2 Score: 38.1206 bits (87), Expect = 1.015e-23
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   85 SLFVYSYKIIIKTCGTTK 102

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.322e-23
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SL
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASL 58

HSP 2 Score: 38.1206 bits (87), Expect = 1.322e-23
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   72 SLFVYAYKIIIKTCGTTK 89

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.179e-23
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 2

Query:  497 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLQMNIL 670
            SAIGFEG+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSL  ++L
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLL 60

HSP 2 Score: 41.2022 bits (95), Expect = 2.179e-23
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVYPYK+IIKTCGTTK
Sbjct:   69 SLFVYPYKIIIKTCGTTK 86

HSP 3 Score: 21.9422 bits (45), Expect = 2.179e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+ LDSYVLSE
Sbjct:   55 LSNDLLDSYVLSE 67

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.826e-23
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEGYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSL
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSL 56

HSP 2 Score: 40.0466 bits (92), Expect = 2.826e-23
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            S FVYPYKVIIKTCGTTK
Sbjct:   70 SFFVYPYKVIIKTCGTTK 87

HSP 3 Score: 23.0978 bits (48), Expect = 2.826e-23
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+ LDSYVLSE
Sbjct:   56 LSNDQLDSYVLSE 68

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.752e-23
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEGYEKRLEVSFFEP  F D  G GLR+L++ QLDEIL PA C IVSSL
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSL 56

HSP 2 Score: 40.0466 bits (92), Expect = 4.752e-23
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            S FVYPYKVIIKTCGTTK
Sbjct:   70 SFFVYPYKVIIKTCGTTK 87

HSP 3 Score: 26.1794 bits (56), Expect = 4.752e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+HLDSYVLSE
Sbjct:   56 LSNDHLDSYVLSE 68

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.413e-22
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEG+EKRLE++FFEP +F DP G+GLR+L K QLDEIL PAECTIV SL
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSL 56

HSP 2 Score: 37.7354 bits (86), Expect = 1.413e-22
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLF+Y YK+IIKTCGTTK
Sbjct:   70 SLFIYAYKIIIKTCGTTK 87

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.743e-22
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + +SAIGFEG  +RLEVSFFEP +F D  G+GLR+LSK Q+DEIL PAECTIVSSL
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSL 56

HSP 2 Score: 39.2762 bits (90), Expect = 1.743e-22
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLF++PYK+IIKTCGTTK
Sbjct:   70 SLFIFPYKIIIKTCGTTK 87

HSP 3 Score: 23.0978 bits (48), Expect = 1.743e-22
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N+ LDSYVLSE
Sbjct:   56 LSNDELDSYVLSE 68

The following BLAST results are available for this feature:

BLAST of CF504635 vs. ExPASy Swiss-Prot

BLAST of CF504635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
DCAM2_ARATH	1.615e-24	75.00	S-adenosylmethionine decarboxylase proenzyme 2 OS=...	[more]
DCAM2_BRAJU	2.717e-24	76.79	S-adenosylmethionine decarboxylase proenzyme 2 OS=...	[more]
DCAM1_DIACA	4.605e-24	76.79	S-adenosylmethionine decarboxylase proenzyme 1 OS=...	[more]
DCAM2_DIACA	1.015e-23	75.00	S-adenosylmethionine decarboxylase proenzyme 2 OS=...	[more]
DCAM_DAUCA	1.322e-23	75.86	S-adenosylmethionine decarboxylase proenzyme OS=Da...	[more]
DCAM_HELAN	2.179e-23	70.69	S-adenosylmethionine decarboxylase proenzyme OS=He...	[more]
DCAM1_ARATH	2.826e-23	73.21	S-adenosylmethionine decarboxylase proenzyme 1 OS=...	[more]
DCAM3_BRAJU	4.752e-23	71.43	S-adenosylmethionine decarboxylase proenzyme 3 OS=...	[more]
DCAM_SPIOL	1.413e-22	71.43	S-adenosylmethionine decarboxylase proenzyme OS=Sp...	[more]
DCAM1_BRAJU	1.743e-22	71.43	S-adenosylmethionine decarboxylase proenzyme 1 OS=...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_120000-124 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504635 ID=CF504635; Name=CF504635; organism=Citrus sinensis; type=EST; length=746bp
GTTTTGTGAAACAGAGTGAAAAATCAACCCTTCTTTAATCCTCAAGGAAT
TTTATTATTTTCTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGT
GGGTTTGTTTTCGTTATATTATCTGAGCAAGGCTGAATGATCTAATGGAG
TCAAAAGGTGGTAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGC
TCCTCTTGGTTACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGA
AGTTCAGATCAGCTGCATACTCAAACTGCGTCCGCAAACCATCCTGAGAT
CGTCCAATTTGTCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAA
TTTTAATTTTTTTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCC
TATTTCTTTTTCGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTT
TGCAATTGTCATTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTG
CAATTGGATTTGAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAG
CCTGGTGTCTTTGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAA
ACATCAATTGGATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTT
CGTTGCAAATGAACATCTTGATTCATATGTCCTCTCAGAATAAGCCTCTT
TGTGTACCCTTACAAAGTTATTATCAAAACTTGTGGGACTACCAAG