CF504655

Overview
NameCF504655
Unique NameCF504655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:67..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504655 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 3 
Query:  219 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 479
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133
The following BLAST results are available for this feature:
BLAST of CF504655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB11_SOLLC2.740e-1143.82Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-144 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504655 ID=CF504655; Name=CF504655; organism=Citrus sinensis; type=EST; length=594bp
CACTAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCTCGACC
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTT
CCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCG
AGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGC
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGG
TTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCAT
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