CF504656

Overview
NameCF504656
Unique NameCF504656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13353 contig Csv1_Contig13353:842..1439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50
Identity = 98/179 (54.75%), Postives = 130/179 (72.63%), Query Frame = 2
Query:    2 HYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVG-SHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEESGKV 535
            HYLHTG+   IIHRDVK+ NILLD+ ++AKV+DFGLSKTGP +  +H+ +A+  +          + RQQLTEKSDVYSFGVV+ E++C RP ++P+LP+E+V+L EWA    KKG LE I+DP+L GK+  E  KK+ E   KC+S  GIERP+MGD+LWNLEF LQ+Q   E++  V
Sbjct:  598 HYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAV--KGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERPAMGDLLWNLEFMLQVQAKDEKAAMV 774          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.286e-50
Identity = 98/172 (56.98%), Postives = 128/172 (74.42%), Query Frame = 2
Query:    2 HYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVG-SHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQES 514
            HYLHTG++  IIHRDVKTTNILLDE +VAK+SDFGLSK GP++  +H+ +A+  +           RRQQLTEKSDVYSFGVVLFE +CAR  +NPTLPK+Q++LAEWA    K+  LE I+D  L+G  +PE  +K+ E A KC++D+G  RP MG+VLW+LE+ LQ+ E+
Sbjct:  630 HYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHTHVSTAV--KGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWALSWQKQRNLESIIDSNLRGNYSPESLEKYGEIAEKCLADEGKNRPMMGEVLWSLEYVLQIHEA 799          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.079e-46
Identity = 92/173 (53.18%), Postives = 117/173 (67.63%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEE 523
            YLHTGAK+TIIHRD+KTTNILLDE +V KVSDFGLS+ GPT  S    + + +           RRQ LTEKSDVYSFGVVL E+LC RP    ++P EQ  L  W    +++G ++QI+D  L   I     +KF E A++CV D+G+ERP M DV+W LEFALQL E+A++
Sbjct:  633 YLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQVLTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWVKSNYRRGTVDQIIDSDLSADITSTSLEKFCEIAVRCVQDRGMERPPMNDVVWALEFALQLHETAKK 805          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45
Identity = 93/173 (53.76%), Postives = 115/173 (66.47%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEE 523
            YLHTGAK+TIIHRD+KTTNILLDE +VAKVSDFGLS+ GPT  S    + + +           RRQ LTEKSDVYSFGVVL E+LC RP    ++P EQ  L  W      K  ++QI+D  L   I     +KF E A++CV D+G+ERP M DV+W LEFALQL E+A++
Sbjct:  640 YLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWVKSNFNKRTVDQIIDSDLTADITSTSMEKFCEIAIRCVQDRGMERPPMNDVVWALEFALQLHETAKK 812          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 90/188 (47.87%), Postives = 122/188 (64.89%), Query Frame = 2
Query:    5 YLHT-GAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQ------ESAEESGKVLGGG 547
            YLH+ G++  IIHRDVK+TNILLDE  +AKV+DFGLSK      S++   +  +          ++  +LTEKSDVY+FGVVL E+L ARPA++P LP E+V+L+EW   C  KG +++I+DP L G+I     KKF E A KC+ + G ERPSM DV+W+LE+ LQLQ      E+ EE    +  G
Sbjct:  599 YLHSSGSEGAIIHRDVKSTNILLDEHNIAKVADFGLSKIHNQDESNISINI--KGTFGYLDPEYLQTHKLTEKSDVYAFGVVLLEVLFARPAIDPYLPHEEVNLSEWVMFCKSKGTIDEILDPSLIGQIETNSLKKFMEIAEKCLKEYGDERPSMRDVIWDLEYVLQLQMMTNRREAHEEDSTAINSG 784          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.146e-28
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVG-SHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEESGKVLGGGMDIE 559
            YLHTG K  ++HRDVKTTNILLDE + AK++DFGLS++ P  G +H+ +A+              R  +L EKSDVYSFG+VL EI+ +RP +  T  +E+  +A W  +   KG +E ++DP L     P    K  E AM CV+    +RP+M  V   L+  L L+ S     + +G    +E
Sbjct:  685 YLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAV--AGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQT--REKPHIAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAMSCVNPSSEKRPTMSQVTNELKQCLTLENSKRGVREDMGSRSSVE 866          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 71/173 (41.04%), Postives = 100/173 (57.80%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEE 523
            YLHT    ++IHRDVK++NILLD+   AKV+DFG SK  P  G   +S  + R           + QQL+EKSDV+SFGVVL EI+  R  LN   P+ + SL EWA    +   +++I+DP +KG    E   +  E A++C+      RP M D++  LE AL ++ +A E
Sbjct:  709 YLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEV-RGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASE 880          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEE 523
            YLHT    ++IHRDVK++NILLD    AKV+DFG SK  P  G   +S  + R           + QQL+EKSDV+SFGVVL EI+  R  LN   P+ + SL EWA    +   +++I+DP +KG    E   +  E A++C+      RP M D++  LE AL ++ +A E
Sbjct:  708 YLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEV-RGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASE 879          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 73/206 (35.44%), Postives = 109/206 (52.91%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEESGKVLGGGMDIEEG----------AFDVDCKGK 592
            YLHTG K  ++HRDVK+TNILLDE++ AK++DFGLS++    G     + +    L           +L+EKSDVYSFG++L EI+  +  ++ T  +E  ++AEW     KKG   QI+DP L G        +  E AM C +   ++RP+M  V+ NL+  L     A E+ ++     +++ G           FD D K K
Sbjct:  678 YLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQVSTVVAGTLGYLDPEYYLTSELSEKSDVYSFGILLLEIITNQRVIDQT--RENPNIAEWVTFVIKKGDTSQIVDPKLHGNYDTHSVWRALEVAMSCANPSSVKRPNMSQVIINLKECL-----ASENTRISRNNQNMDSGHSSDQLNVTVTFDTDVKPK 876          
BLAST of CF504656 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.023e-25
Identity = 68/176 (38.64%), Postives = 100/176 (56.82%), Query Frame = 2
Query:    5 YLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTVGSHLMSALL*RVVLAIWTQSTIRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAAHCHKKGILEQIMDPYLKGKIAPECFKKFAETAMKCVSDQGIERPSMGDVLWNLEFALQLQESAEESGK 532
            YLHTG   +IIHRDVK++NILLD    AKVSDFGLS+      +H+ S    +  +          QQLTEKSDVYSFGVVLFE+L  +  ++      ++++  WA    +KG +  I+DP +   +  E   + AE A +CV  +G  RP M +V+  ++ A++++   E   K
Sbjct:  718 YLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVA--KGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWARSLIRKGDVCGIIDPCIASNVKIESVWRVAEVANQCVEQRGHNRPRMQEVIVAIQDAIRIERGNENGLK 891          
The following BLAST results are available for this feature:
BLAST of CF504656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
Y2393_ARATH3.099e-5054.75Probable receptor-like protein kinase At2g39360 OS... [more]
Y1357_ARATH5.286e-5056.98Probable receptor-like protein kinase At1g30570 OS... [more]
Y5900_ARATH2.079e-4653.18Putative receptor-like protein kinase At5g39000 OS... [more]
Y5389_ARATH1.760e-4553.76Probable receptor-like protein kinase At5g38990 OS... [more]
Y2232_ARATH1.305e-4047.87Probable receptor-like protein kinase At2g23200 OS... [more]
Y2289_ARATH1.146e-2839.78Probable LRR receptor-like serine/threonine-protei... [more]
NORK_MEDTR3.334e-2841.04Nodulation receptor kinase OS=Medicago truncatula ... [more]
NORK_PEA4.354e-2841.04Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
MEE39_ARATH9.700e-2835.44Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH2.023e-2538.64Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-145 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504656 ID=CF504656; Name=CF504656; organism=Citrus sinensis; type=EST; length=601bp
ACACTATCTCCACACTGGTGCCAAACACACGATTATCCACAGAGATGTTA
AGACTACCAATATTCTTTTGGACGAGAAGTGGGTGGCAAAGGTTTCTGAT
TTTGGTTTGTCAAAAACAGGTCCCACCGTTGGATCACACCTCATGTCAGC
ACTGTTGTGAAGGGTAGTTTTGGCTATTTGGACCCAGAGTACTATCAGGC
GTCAGCAACTAACAGAGAAGTCTGATGTTTATTCTTTTGGTGTCGTGCTC
TTCGAAATCCTGTGTGCTCGACCAGCCTTAAACCCAACTTTGCCCAAGGA
GCAAGTGAGCTTGGCTGAGTGGGCTGCTCATTGTCACAAGAAAGGAATAC
TCGAACAGATTATGGACCCTTATCTCAAGGGAAAGATTGCACCTGAATGC
TTCAAAAAGTTTGCCGAGACAGCAATGAAGTGTGTATCTGATCAAGGTAT
TGAGAGGCCATCAATGGGCGATGTGCTGTGGAACCTAGAGTTCGCTTTGC
AGCTACAAGAGAGTGCAGAGGAAAGCGGCAAAGTTCTTGGCGGAGGAATG
GACATTGAGGAAGGAGCATTTGATGTCGACTGTAAAGGTAAGAAAGATCC
C
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