CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.757e-52
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AI N+ISNPVNSTVPIAAE FKKAGTY+ K
Sbjct:   43 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPK 184          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.369e-52
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAG+PRKPGMTRDDLF INAGIVK LC  +AK CPNAI N+ISNPVNSTVPIAAE FKKAGTY+ K
Sbjct:   41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPK 182          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.425e-51
Identity = 101/142 (71.13%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLF INAGIVK LC  +AK CPNAI N+ISNPVNSTV IAAE FKKAGTY+ K
Sbjct:   45 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.208e-50
Identity = 100/142 (70.42%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  136 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+ LC  +AK CPNAI N+ISNPVNSTV IAAE FKKAGTY+ K
Sbjct:   45 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.336e-49
Identity = 100/153 (65.36%), Postives = 123/153 (80.39%), Query Frame = 1
Query:  112 RGYSS---ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            RG+++    S   RKVAVLGAAGGIGQPL++LMK+N  VS L+LYDIA TPGVAADV HINT+++V G+   D L +AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+DL +A+ ++CP A+ N+ISNPVNSTVPIAAE  KK G Y+++
Sbjct:   50 RGFAAAAPSSGKGRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPVNSTVPIAAEQLKKMGVYDKR 201          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.977e-49
Identity = 99/158 (62.66%), Postives = 124/158 (78.48%), Query Frame = 1
Query:   82 SKPLRSPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            ++P+ + L  R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+  +ISNPVNST+PI AE FKK G YN
Sbjct:    6 ARPVGAALR-RSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.077e-49
Identity = 97/148 (65.54%), Postives = 118/148 (79.73%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+  +ISNPVNST+PI AE FKK G YN
Sbjct:   15 RSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 6.631e-49
Identity = 97/148 (65.54%), Postives = 118/148 (79.73%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            R +S+    + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A+  +ISNPVNST+PI AE FKK G YN
Sbjct:   15 RSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 6.631e-49
Identity = 96/148 (64.86%), Postives = 118/148 (79.73%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+  +I+NPVNST+PI AE FKK G YN
Sbjct:   15 RSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.660e-49
Identity = 97/153 (63.40%), Postives = 120/153 (78.43%), Query Frame = 1
Query:   97 SPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            S +  R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L SA A++CP A+  +I+NPVNST+PI AE FKK G YN
Sbjct:   10 SAVLRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYN 162          
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDHG_CITLA3.757e-5270.42Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG1_ARATH8.369e-5271.13Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_BRANA5.425e-5171.13Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.208e-5070.42Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM_CHLRE1.336e-4965.36Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_RAT2.977e-4962.66Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_BOVIN5.077e-4965.54Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_PIG6.631e-4965.54Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_MOUSE6.631e-4964.86Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_PONAB8.660e-4963.40Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
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