CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.520e-48
Identity = 95/148 (64.19%), Postives = 118/148 (79.73%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A+  +I+NPVNST+PI AE FKK G YN
Sbjct:   15 RSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.786e-47
Identity = 95/139 (68.35%), Postives = 111/139 (79.86%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQPL+LL+K++PLVS L LYDIAN  GVAAD+ H NT S+V  + G  +L   L+D +VV+IPAGVPRKPGMTRDDLFNINA IVK L  A+A+ CPNA  ++ISNPVNSTVPIAAE  KK G Y+ K
Sbjct:   84 KVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPK 222          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.206e-47
Identity = 94/148 (63.51%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  112 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++ P A+  +I+NPVNST+PI AE FKK G YN
Sbjct:   15 RSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMICIIANPVNSTIPITAEVFKKHGVYN 162          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.383e-46
Identity = 96/165 (58.18%), Postives = 123/165 (74.55%), Query Frame = 1
Query:   79 PSKPLRSPLEHRGYSSESVPDR----KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            P+K L     + G  + SV       KVA+LGAAGGIGQPL LL+K +PLV+ LALYD+ NTPGVAAD+ HI++ ++V  + G  +L  A+E++DV++IPAGVPRKPGMTRDDLFN NAGIV+DL + IAK  P A+  +I+NPVNSTVPIA+E  KKAG Y+ K
Sbjct:    4 PAKTLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPK 168          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.698e-42
Identity = 92/159 (57.86%), Postives = 114/159 (71.70%), Query Frame = 1
Query:   88 PLRSPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            PL+S +  R +S+ S    KVAVLGA GGIGQPL++L+KLN  VS LAL+DI   PGVAAD+GHINT S V GY  +D+ L +AL  +DVVIIPAGVPRKPGMTRDDLF  NA IV+DL  A  + CP A   +++NPVNSTVPI  +  ++ G +  K
Sbjct:   12 PLKS-IAPRSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVGVHQPK 169          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.526e-40
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 1
Query:   97 SPLEHRGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            S +  R +SS      KV VLGA GGIGQPL+LL+KLN  V+ L LYD+    GVA D+ HI T S V G+     D L  AL+D+D+V+IPAGVPRKPGMTRDDLF INA IV+DL +A A+  PNA   +ISNPVNSTVPI A+  K  G YN K
Sbjct:    3 SRVAKRAFSSTVANPYKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVISNPVNSTVPIVAQVLKNKGVYNPK 159          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.299e-40
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +VAG+ G D L +AL+D+D+V+IPAG+PRKPGM R DLFN+NAGI+K L   I   CP A+  +I+NPVN TVPI AE FKKAGTY+ K
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVASCPKALVGIITNPVNGTVPIVAEVFKKAGTYDAK 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.253e-39
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTY 552
            KVA+LGA+GG+GQPL+LL+KL+P VS LALYDI    G+  D+ HINT S   GY   D +   L ++ VV+IPAGVPRKPG+TRDDLF +NAGIVK L +A+ K+ PNA   +ISNPVNS VPIA E  KK G +
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVISNPVNSLVPIAVETLKKMGKF 137          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.792e-39
Identity = 87/141 (61.70%), Postives = 105/141 (74.47%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +V G+ G D L  AL  SD+V+IPAGVPRKPGM R DLFN+NAGIVK+L   +A  CPNA   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVADNCPNACVGIITNPVNTTVPIAAEVLKKAGCYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.792e-39
Identity = 89/141 (63.12%), Postives = 107/141 (75.89%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D +  ALE++DVV+I AGV RKPGM R DLFNINAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y+++
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPI-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKR 141          
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDHM_HUMAN2.520e-4864.19Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHP_ARATH2.786e-4768.35Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_MACFA6.206e-4763.51Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_CAEEL1.383e-4658.18Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_SCHPO2.698e-4257.86Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_YEAST2.526e-4057.32Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_PSEHT3.299e-4061.70Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDHP_YEAST1.253e-3959.56Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDH_IDILO2.792e-3961.70Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_HAES22.792e-3963.12Malate dehydrogenase OS=Haemophilus somnus (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
back to top