CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.221e-39
Identity = 89/141 (63.12%), Postives = 106/141 (75.18%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D    ALE++DVV+I AGV RKPGM R DLFNINAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y+++
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPT-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.061e-38
Identity = 78/133 (58.65%), Postives = 103/133 (77.44%), Query Frame = 1
Query:  163 AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            A+GGIG+PL+LL+K +PL+S+LALYDIA+  GVAAD+ HI T++ V  ++G  +L + L  ++VVIIPAG+PRKPGMTRDDLFN NA IV +L  + AK CP A+  +I+NPVNSTVPIAAE  K+   Y+ K
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICIITNPVNSTVPIAAEILKRHNVYDPK 133          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.386e-38
Identity = 90/141 (63.83%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CPNA   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.364e-38
Identity = 90/141 (63.83%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CPNA   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38
Identity = 85/139 (61.15%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYN 555
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +VAG+ G D L  AL  +D+V+IPAG+PRKPGM R DLFN+NAGI+K L   I   CP A+  +I+NPVN TVPI AE FKKAGTY+
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAGIIKVLAEGIVASCPKALVGVITNPVNGTVPIVAEVFKKAGTYD 139          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.266e-38
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVAAD+ HI T+  V G+ G D    AL+D+DVV+I AGV RKPGM R DLFN+NAGIV++L   +A+ CP A+  +I+NPVN+TV IAAE  KKAG Y++K
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGIITNPVNTTVAIAAEVLKKAGVYDKK 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.878e-38
Identity = 88/141 (62.41%), Postives = 105/141 (74.47%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  +V G+ G D    AL+ +DVV+I AGV RKPGM R DLFNINAGIV++L   +A+ CP A   +I+NPVN+TV IAAE  KKAG Y+++
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPT-PALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.983e-38
Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CP A   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.983e-38
Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CP A   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPTACVGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.173e-37
Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK L   IA  CP A   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVTCPTACVGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDH_HAES16.221e-3963.12Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDHM_SCHMA1.061e-3858.65Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_VIBVU1.386e-3863.83Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_VIBVY2.364e-3863.83Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_COLP33.087e-3861.15Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_PROMH5.266e-3861.70Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_PASMU6.878e-3862.41Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_VIBPA8.983e-3863.12Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]
MDH_VIBHB8.983e-3863.12Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_VIBSL1.173e-3763.12Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
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