CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 88/141 (62.41%), Postives = 102/141 (72.34%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV++ AGV RKPGM R DLFN+NAGIVK L   IA  CP A   +I+NPVN+TVPIAAE  KKAG Y+++
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPT-PALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGIITNPVNTTVPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 87/140 (62.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+  +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGIITNPVNTTVAIAAEVLKKAGVYDK 140          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL D+DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+  +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVDADVVLISAGVARKPGMDRSDLFNINAGIVRNLMEKVAATCPKALVGIITNPVNTTVAIAAEVMKKAGVYDK 140          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37
Identity = 86/141 (60.99%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   +AG+ G D    AL  +DVV+I AGV RKPGM R DLFNINAGI+K+L    A+ CPNA   +I+NPVN+TVPIAAE  K+AG Y+++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAAVTPGVAVDLSHIPTDVTIAGFAGTDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAEVCPNACIGIITNPVNTTVPIAAEVLKQAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_HAEPS (Malate dehydrogenase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37
Identity = 87/141 (61.70%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KVAVLGAAGGIGQ LALL+KL  P  + LALYDIA  TPGVA DV HI T  +V GY G D    ALE +++V+I AGV RKPGM R DLFNINAGIV++L   +A  CP A   +I+NPVN+TV IAAE  KKAG Y+++
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTNLALYDIAPVTPGVAVDVSHIPTAVKVVGYAGEDPT-PALEGANLVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVATVCPTACVGIITNPVNTTVAIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.458e-37
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    ALE +DVV+I AGV RKPGM R DLFNINAGIV++L   +A  CP A+  +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGIITNPVNTTVAIAAEVLKKAGVYDK 140          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.458e-37
Identity = 85/140 (60.71%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ L+LL+K   P  S LALYD+A   PGVA D+ HI T  +V G+ G D L  AL  +DVV+IPAG+PRKPGM R DLFNINAGIVK+L   +A  CPNA   +I+NPVN+TV IAAE  K  G Y++
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADNCPNACVGIITNPVNTTVAIAAETLKAKGVYDK 140          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.458e-37
Identity = 81/141 (57.45%), Postives = 108/141 (76.60%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNEK 561
            KV +LGA+GGIGQPL+LL+KL+ P  S L+LYD+A  TPGVA D+ HI T  EV G+ G+D   +AL+ +D+V+I AGV RKPGMTR DLFN+NAGI+++L   +A+ CP A   +I+NPVNS +PIAAE  KKAG Y+++
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDP-SEALKGADIVLICAGVARKPGMTRADLFNVNAGIIQNLVEKVAQVCPQACVCIITNPVNSIIPIAAEVLKKAGVYDKR 141          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 84/140 (60.00%), Postives = 102/140 (72.86%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ L+LL+K   P  + LALYD+A   PGVA D+ HI T  +V G+ G D L +AL  SD+V+IPAGVPRKPGM R DLFNINAGIV++L  ++A  CP A   +I+NPVN+TV IAAE  K  G YN+
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAGIVRNLVDSVADNCPEACLCIITNPVNTTVAIAAEALKAKGVYNK 140          
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATS-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140          
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDH_VIBCH2.614e-3762.41Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHEAM2.614e-3762.14Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_SHEDO3.414e-3761.43Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_MORJA3.414e-3760.99Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_HAEPS3.414e-3761.70Malate dehydrogenase OS=Haemophilus parasuis serov... [more]
MDH_SHESA4.458e-3761.43Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]
MDH_ALTMD4.458e-3760.71Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_ACTSZ4.458e-3757.45Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_PSEA65.823e-3760.00Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDH_ECOLC5.823e-3761.43Malate dehydrogenase OS=Escherichia coli (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
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