CF504660

Overview
NameCF504660
Unique NameCF504660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 87/140 (62.14%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 87/140 (62.14%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   IAK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
[Close]
BLAST of CF504660 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:  145 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIGNMISNPVNSTVPIAAEGFKKAGTYNE 558
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A   +I+NPVN+TV IAAE  KKAG Y++
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDK 140
The following BLAST results are available for this feature:
BLAST of CF504660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MDH_KLEP77.605e-3762.14Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP37.605e-3762.14Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ECOUT7.605e-3761.43Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM7.605e-3761.43Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI7.605e-3761.43Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOL67.605e-3761.43Malate dehydrogenase OS=Escherichia coli O6 GN=mdh... [more]
MDH_ECOL57.605e-3761.43Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECOK17.605e-3761.43Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS7.605e-3761.43Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]
MDH_ECODH7.605e-3761.43Malate dehydrogenase OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-149 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504660 ID=CF504660; Name=CF504660; organism=Citrus sinensis; type=EST; length=562bp
GTCTCTTCATTATCATTTCTCTCCCTGCCTCTCTAAAGTTTAAACCCGCA
ACAAAAATGAGATCTTCAGTTCTCCGATCCGTCAAAACCCTTGCGAAGCC
CGCTGGAGCACCGCGGCTACTCCTCCGAGTCCGTGCCCGATCGCAAGGTG
GCCGTCCTCGGTGCCGCTGGCGGGATCGGCCAGCCACTGGCTTTGCTCAT
GAAGCTCAACCCGCTTGTCTCCAGGCTCGCCCTCTATGATATTGCTAACA
CTCCTGGTGTTGCTGCTGATGTCGGCCACATCAACACCAGATCTGAGGTT
GCTGGGTACATGGGTAATGATCAGCTTGGCCAAGCTTTGGAGGATTCAGA
TGTTGTCATCATACCGGCTGGTGTTCCCAGGAAACCGGGTATGACGCGTG
ATGATCTATTTAACATCAATGCTGGAATTGTCAAGGACCTGTGCTCTGCA
ATTGCCAAGTATTGTCCCAATGCAATTGGTAACATGATTAGCAACCCTGT
GAACTCAACTGTTCCAATTGCTGCTGAGGGTTTTAAGAAAGCCGGGACAT
ACAATGAGAAGA
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