CF504661

Overview
NameCF504661
Unique NameCF504661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.156e-19
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            ++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++   WVILGHSERR
Sbjct:   90 YIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERR 142          

HSP 2 Score: 43.1282 bits (100), Expect = 6.156e-19
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            ++ E +EF+G K AYALSQ LKV+AC+GE
Sbjct:  144 VIGEDDEFIGKKAAYALSQNLKVMACIGE 172          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.436e-17
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            ++  VKSSL     ++ QN WV KGGAFTGEIS E L +L   WVILGHSERR
Sbjct:  107 YIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERR 159          

HSP 2 Score: 43.5134 bits (101), Expect = 1.436e-17
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            ++ E +EF+G K AYALS+GL VIAC+GE
Sbjct:  161 VIGEKDEFIGKKAAYALSEGLGVIACIGE 189          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.172e-16
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            +L  VKSSL     ++ QN WV KGGAFTGEIS E L ++   WVILGHSERR
Sbjct:  106 YLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERR 158          

HSP 2 Score: 40.4318 bits (93), Expect = 1.172e-16
Identity = 16/29 (55.17%), Postives = 24/29 (82.76%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            ++ E ++F+G K AYAL++GL VIAC+GE
Sbjct:  160 VIGEDDQFIGKKAAYALNEGLGVIACIGE 188          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.635e-15
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR  F
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIF 83          

HSP 2 Score: 39.6614 bits (91), Expect = 1.635e-15
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I  E +E + DK A+AL++GLKVIAC+GE
Sbjct:   82 IFGESDELIADKVAHALAEGLKVIACIGE 110          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.112e-15
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR  F
Sbjct:   46 YLTLARSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIF 101          

HSP 2 Score: 39.6614 bits (91), Expect = 2.112e-15
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I  E +E + DK A+AL++GLKVIAC+GE
Sbjct:  100 IFGESDELIADKVAHALAEGLKVIACIGE 128          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 4.633e-15
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L  VK+ +     VAAQNCW    GAFTGEIS  M+ ++ + WVILGHSERR  F
Sbjct:   46 YLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIF 101          

HSP 2 Score: 37.3502 bits (85), Expect = 4.633e-15
Identity = 17/29 (58.62%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I  E +E V +K A+AL  GLKVIAC+GE
Sbjct:  100 IFGEKDELVAEKVAHALESGLKVIACIGE 128          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.878e-15
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR  F
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIF 83          

HSP 2 Score: 37.3502 bits (85), Expect = 7.878e-15
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I  E  E + DK  +AL++GLKVIAC+GE
Sbjct:   82 IFGESGELIADKIVHALAEGLKVIACIGE 110          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.716e-14
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L  V+ SL    HVAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR  F
Sbjct:   48 YLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIF 103          

HSP 2 Score: 36.5798 bits (83), Expect = 1.716e-14
Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I NE +E V +K  +AL++GL V+AC+GE
Sbjct:  102 IFNESDELVAEKVQHALAEGLSVVACIGE 130          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.729e-14
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRPYF 260
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L + WVILGHSERR  F
Sbjct:   28 YLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIF 83          

HSP 2 Score: 38.1206 bits (87), Expect = 1.729e-14
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  256 ILNELNEFVGDKGAYALSQGLKVIACVGE 342
            I  E +E + +K A+AL +GLKVIAC+GE
Sbjct:   82 IFGETDELIAEKVAHALGEGLKVIACIGE 110          
BLAST of CF504661 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.696e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   93 FLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR 251
            +L  VK +L +P   VAAQN + K  GAFTGEISA  L++L + WVILGHSERR
Sbjct:   46 YLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERR 99          

HSP 2 Score: 31.9574 bits (71), Expect = 6.696e-13
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  259 LNELNEFVGDKGAYALSQGLKVIACVGE 342
            L E +EF+  K  YAL  G+ VI C GE
Sbjct:  102 LGESDEFIASKTKYALDNGISVIWCCGE 129          
The following BLAST results are available for this feature:
BLAST of CF504661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
TPIC_SECCE6.156e-1964.15Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH1.436e-1760.38Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN1.172e-1660.38Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_AEDTO1.635e-1558.93Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULTA2.112e-1558.93Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_BOMMO4.633e-1553.57Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_CULPI7.878e-1558.93Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_SCHJA1.716e-1455.36Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_ANOME1.729e-1457.14Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_NEUCR6.696e-1359.26Triosephosphate isomerase OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-150 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504661 ID=CF504661; Name=CF504661; organism=Citrus sinensis; type=EST; length=343bp
TGAAGAAGTGAAAAAGATAGTGAGCGTACCTCAATGAAGGTCAAGTTCCA
TCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGG
ACTGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCCGCACAGAATT
GCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATG
CTCGTCAATTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAG
ACCCTATTTTGAATGAATTAAATGAGTTTGTTGGGGATAAGGGTGCATAT
GCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGA
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