CF504664

Overview
NameCF504664
Unique NameCF504664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:45..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  + H A+LHGC +  +A VGM +  + G
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  + H A+LHGC +  +A VGM +  + G
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  + H A+LHGC +  +A VGM +  + G
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  + H A+LHGC +  +A VGM +  + G
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALTI (Carnitine operon protein caiE OS=Salmonella typhi GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALSV (Carnitine operon protein caiE OS=Salmonella schwarzengrund (strain CVM19633) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALPK (Carnitine operon protein caiE OS=Salmonella paratyphi A (strain AKU_12601) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALPC (Carnitine operon protein caiE OS=Salmonella paratyphi C (strain RKS4594) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
[Close]
BLAST of CF504664 vs. ExPASy Swiss-Prot
Match: CAIE_SALPA (Carnitine operon protein caiE OS=Salmonella paratyphi A GN=caiE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  219 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVCHSAVLHGCTVEDEAFVGMGAHYLMG 524
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  + H A+LHGC V  +A VGM +  + G
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDG 106
The following BLAST results are available for this feature:
BLAST of CF504664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CAIE_ECOLI1.224e-1140.20Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLC1.224e-1140.20Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECODH1.224e-1140.20Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOBW1.224e-1140.20Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SALTY2.727e-1139.22Carnitine operon protein caiE OS=Salmonella typhim... [more]
CAIE_SALTI2.727e-1139.22Carnitine operon protein caiE OS=Salmonella typhi ... [more]
CAIE_SALSV2.727e-1139.22Carnitine operon protein caiE OS=Salmonella schwar... [more]
CAIE_SALPK2.727e-1139.22Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPC2.727e-1139.22Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPA2.727e-1139.22Carnitine operon protein caiE OS=Salmonella paraty... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-153 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504664 ID=CF504664; Name=CF504664; organism=Citrus sinensis; type=EST; length=526bp
TCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAA
AGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTT
CTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCC
AAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATG
AACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCC
AAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTT
GGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCA
GGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCT
AAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTATGCC
ATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGC
ATGGGAGCACACTACTTGATGGGGTT
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