CF504666

Overview
NameCF504666
Unique NameCF504666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig557 contig Csv1_Contig557:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 60/173 (34.68%), Postives = 79/173 (45.66%), Query Frame = 1
Query:   91 AQHRTCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYY 591
            A  + CG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYY
Sbjct:   23 AAAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYY 177          
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.794e-18
Identity = 58/176 (32.95%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   91 AQHRTCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GKYY 591
            A  + CG    C  G CCS++G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+ GK Y
Sbjct:   25 AAAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKY 181          
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 58/176 (32.95%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   88 EAQHRTCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GKYY 591
            +A  + CG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+ GK Y
Sbjct:   26 QASAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKY 184          
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 55/163 (33.74%), Postives = 74/163 (45.40%), Query Frame = 1
Query:  100 RTCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPC 576
            + CG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC
Sbjct:   24 QNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPC 160          
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 63/181 (34.81%), Postives = 76/181 (41.99%), Query Frame = 1
Query:  100 RTCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPCRG--KYY 591
            + CG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYY
Sbjct:   28 QNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYY 185          
BLAST of CF504666 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 53/149 (35.57%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  139 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 576
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPC 136          
The following BLAST results are available for this feature:
BLAST of CF504666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE3.022e-1834.68Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ8.794e-1832.95Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ2.559e-1732.95Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU5.700e-1733.74Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIP_BETVU3.695e-1634.81Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA6.302e-1635.57Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-155 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504666 ID=CF504666; Name=CF504666; organism=Citrus sinensis; type=EST; length=593bp
GGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGGGTCC
TTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCAGCACA
GAACCTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAGTCGA
TTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCCAAAG
TAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGGACGG
CTGGCGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTTTGAA
GACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCTTCTA
CACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTA
ATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCC
CAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGA
ATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGTGCTGCGTCGTCCG
ACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGG
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