CF504668

Overview
NameCF504668
Unique NameCF504668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length185
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: ACON_CORDI (Aconitate hydratase OS=Corynebacterium diphtheriae GN=acn PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 185
            GVV KFVEF+G+G+  + LA+RATI NMSPE+G+T   FP+D  T++Y+ LTGRS+E VA+
Sbjct:  272 GVVQKFVEFYGNGVKSIPLANRATIGNMSPEFGSTCAIFPIDEETVKYMHLTGRSEEQVAL 332          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: ACON_COREF (Aconitate hydratase OS=Corynebacterium efficiens GN=acn PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.924e-15
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 185
            GVV KFVEF+G+G+  + LA+RATI NMSPE+G+T   FP+D  T++YL+LTGR +E +A+
Sbjct:  272 GVVQKFVEFYGNGVKSVPLANRATIGNMSPEFGSTCAMFPIDEETIKYLRLTGRPEEQIAL 332          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: IREB2_PIG (Iron-responsive element-binding protein 2 OS=Sus scrofa GN=IREB2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.433e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTG 161
            GV GKFVEF G G+ +LS+ DR TIANM PEYGA + FFPVD+VTL++L+ TG
Sbjct:  348 GVAGKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLKHLEYTG 400          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: ACON_CORGL (Aconitate hydratase OS=Corynebacterium glutamicum GN=acn PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.433e-14
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 185
            GVV KFVEF+G G+  + LA+RATI NMSPE+G+T   FP+D  T +YL+LTGR +E VA+
Sbjct:  272 GVVQKFVEFYGSGVKAVPLANRATIGNMSPEFGSTCAMFPIDEETTKYLRLTGRPEEQVAL 332          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: IREB2_HUMAN (Iron-responsive element-binding protein 2 OS=Homo sapiens GN=IREB2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRS 167
            GV GKFVEF G G+ +LS+ DR TIANM PEYGA + FFPVD+VTL++L+ TG S
Sbjct:  347 GVAGKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGFS 401          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: IREB2_RAT (Iron-responsive element-binding protein 2 OS=Rattus norvegicus GN=Ireb2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.444e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTG 161
            GV GKFVEF G G+ +LS+ DR TIANM PEYGA + FFPVD+VTL++L+ TG
Sbjct:  348 GVAGKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLRHLEHTG 400          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: IREB2_MOUSE (Iron-responsive element-binding protein 2 OS=Mus musculus GN=Ireb2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.444e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 3
Query:    3 GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTG 161
            GV GKFVEF G G+ +LS+ DR TIANM PEYGA + FFPVD+VTL++L+ TG
Sbjct:  348 GVAGKFVEFFGSGVSQLSIVDRTTIANMCPEYGAILSFFPVDNVTLRHLEHTG 400          
BLAST of CF504668 vs. ExPASy Swiss-Prot
Match: IREB2_CHICK (Iron-responsive element-binding protein 2 OS=Gallus gallus GN=IREB2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.168e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3
Query:    6 VVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTG 161
            V GKFVEF G G+ +LS+ADR TIANM PEYGA + FFPVD+VTL++L+ TG
Sbjct:  350 VAGKFVEFFGSGVSQLSVADRTTIANMCPEYGAILSFFPVDNVTLKHLRHTG 401          
The following BLAST results are available for this feature:
BLAST of CF504668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ACON_CORDI3.770e-1559.02Aconitate hydratase OS=Corynebacterium diphtheriae... [more]
ACON_COREF4.924e-1557.38Aconitate hydratase OS=Corynebacterium efficiens G... [more]
IREB2_PIG1.433e-1466.04Iron-responsive element-binding protein 2 OS=Sus s... [more]
ACON_CORGL1.433e-1459.02Aconitate hydratase OS=Corynebacterium glutamicum ... [more]
IREB2_HUMAN1.871e-1465.45Iron-responsive element-binding protein 2 OS=Homo ... [more]
IREB2_RAT2.444e-1466.04Iron-responsive element-binding protein 2 OS=Rattu... [more]
IREB2_MOUSE2.444e-1466.04Iron-responsive element-binding protein 2 OS=Mus m... [more]
IREB2_CHICK4.168e-1467.31Iron-responsive element-binding protein 2 OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-157 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504668 ID=CF504668; Name=CF504668; organism=Citrus sinensis; type=EST; length=185bp
ATGGTGTTGTTGGAAAATTTGTTGAGTTCCATGGGGATGGTATGGGTGAA
CTTTCACTTGCTGACAGAGCTACCATTGCTAATATGTCTCCCGAGTATGG
AGCAACCATGGGGTTCTTTCCTGTGGATCATGTTACTTTACAATATCTCA
AATTGACTGGAAGGAGTGATGAGACAGTGGCAATG
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