CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.754e-21
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D YLK E +GEGTYGVVYK  +  TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+++ L+D    +  L+LVFEF+  DL+
Sbjct:    2 DDYLKIEKIGEGTYGVVYKGRNKTTGQVVAMKKIRLESEEEGVPSTAVREISLLKELQHPNVVRLLDVLMQESKLYLVFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D + K E +GEGTYGVVYKA + +TGQ VA+KKIRL  + EGV  TA+REI LLKELK P+I+ L+D   ++  L+LVFEF+  DL+
Sbjct:    2 DMFQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKELKHPNIVRLLDVVHNERKLYLVFEFLSQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_RANDY (Cell division control protein 2 homolog OS=Rana dybowskii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D Y K E +GEGTYGVVYK +   TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L+D       L+L+FEF+  DL+
Sbjct:    2 DEYAKIEKIGEGTYGVVYKGVHKATGQIVAMKKIRLENEEEGVPSTAIREISLLKELQHPNIVCLLDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK3_MOUSE (Cell division protein kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D + K E +GEGTYGVVYKA +  TGQ VA+KKIRL  + EGV  TA+REI LLKELK P+II+L+D    +  L++VFEF+  DL+
Sbjct:    2 DVFQKVEKIGEGTYGVVYKARNKVTGQLVALKKIRLDLEAEGVPSTAVREISLLKELKHPNIIKLLDVVHREKKLYMVFEFLTQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLU (Cell division control protein 2 homolog OS=Oryzias luzonensis GN=cdc2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+RE+ LL+ELK P+++ L+D    +  L+L+FEF+  DL+
Sbjct:    4 YVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLA (Cell division control protein 2 homolog OS=Oryzias latipes GN=cdc2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+RE+ LL+ELK P+++ L+D    +  L+L+FEF+  DL+
Sbjct:    4 YVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_ORYJA (Cell division control protein 2 homolog OS=Oryzias javanicus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+RE+ LL+ELK P+++ L+D    +  L+L+FEF+  DL+
Sbjct:    4 YVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_ORYCU (Cell division control protein 2 homolog OS=Oryzias curvinotus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+RE+ LL+ELK P+++ L+D    +  L+L+FEF+  DL+
Sbjct:    4 YVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2B_XENLA (Cell division control protein 2-B OS=Xenopus laevis GN=cdc2-B PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D Y K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L+D       L+L+FEF+  DL+
Sbjct:    2 DEYTKIEKIGEGTYGVVYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQHPNIVCLLDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2A_XENLA (Cell division control protein 2-A OS=Xenopus laevis GN=cdc2-A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D Y K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L+D       L+L+FEF+  DL+
Sbjct:    2 DEYTKIEKIGEGTYGVVYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQHPNIVCLLDVLMQDSRLYLIFEFLSMDLK 88          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDC2_CARAU4.754e-2156.32Cell division control protein 2 homolog OS=Carassi... [more]
CDK3_HUMAN8.108e-2157.47Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC2_RANDY1.806e-2055.17Cell division control protein 2 homolog OS=Rana dy... [more]
CDK3_MOUSE6.864e-2057.47Cell division protein kinase 3 OS=Mus musculus GN=... [more]
CDC2_ORYLU6.864e-2052.94Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYLA6.864e-2052.94Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYJA6.864e-2052.94Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYCU6.864e-2052.94Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2B_XENLA6.864e-2055.17Cell division control protein 2-B OS=Xenopus laevi... [more]
CDC2A_XENLA6.864e-2055.17Cell division control protein 2-A OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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