CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL-----------------IDAFPHKGNLHLVFEFMETDL 337
            D + K E +GEGTYG VY A +T+T + VA+KKIR+  ++EG   TA+REIK+LK+L   ++I+L                 I    +KG++++VFE+M+ DL
Sbjct:   23 DCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDL 125          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK12_CAEEL (Putative cell division protein kinase 12 OS=Caenorhabditis elegans GN=cdtl-7 PE=3 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF----------PHKGNLHLVFEFMETDL 337
            Y   + +GEGTYG VYKA++  TG+ VA+K++RL  +KEG   TA+REIK+L++L   +I+ L+D              + N +LVFE+++ DL
Sbjct:  311 YTMLDQIGEGTYGQVYKAVNNLTGEQVALKRVRLENEKEGFPITAIREIKILRQLHHKNIVRLMDIVIDDISMDELKRTRANFYLVFEYVDHDL 404          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAYO (Cell division control protein 2 homolog OS=Plasmodium yoelii yoelii GN=CRK2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFT-ALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            ++Y   E +GEGTYGVVYKA     G++ A+KKIRL K+ EG+  T ++REI +LKEL+  +I++L D    K  L LVFE ++ DL+ +I
Sbjct:    2 EKYHGLEKIGEGTYGVVYKA-QNSDGESFALKKIRLEKEDEGIPSTVSIREISILKELRHSNIVKLYDVIHAKKRLILVFEHLDQDLKKLI 91          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPH-----------KGNLHLVFEFMETDLETVI 349
            ++Y K E +GEGTYG VYKA++  TG+ VA+KK RL   +EG+  TALREI LL+ L +   +  +    H           K NL+LVFE+++TDL+  I
Sbjct:    2 EKYEKLEKVGEGTYGKVYKAMEKGTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSTSIYVVRLLCVEHVHQPSTKSQSTKSNLYLVFEYLDTDLKKFI 102          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_GLOMM (Cell division protein kinase 5 homolog OS=Glossina morsitans morsitans GN=Cdk5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +Y K E +GEGTYG V+K  + +T + VA+K++RL +  EGV  +ALREI LLKELK  +I+ L D    +  L LVFE  + DL+
Sbjct:    3 KYEKLEKIGEGTYGTVFKGRNRETLEIVALKRVRLDEDDEGVPSSALREICLLKELKHKNIVRLYDVLHSEKKLTLVFEHCDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK10_RAT (Cell division protein kinase 10 OS=Rattus norvegicus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  104 LGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF--PHKGNLHLVFEFMETDLETVI 349
            +GEGTYG+VY+A DT+T + VA+KK+R+ K+K+G+  ++LREI LL  L+ P+I+EL +     H  ++ LV  + E DL +++
Sbjct:   43 IGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLL 126          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK10_MOUSE (Cell division protein kinase 10 OS=Mus musculus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  104 LGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF--PHKGNLHLVFEFMETDLETVI 349
            +GEGTYG+VY+A DT+T + VA+KK+R+ K+K+G+  ++LREI LL  L+ P+I+EL +     H  ++ LV  + E DL +++
Sbjct:   45 IGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLL 128          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK10_HUMAN (Cell division protein kinase 10 OS=Homo sapiens GN=CDK10 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  104 LGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF--PHKGNLHLVFEFMETDLETVI 349
            +GEGTYG+VY+A DT+T + VA+KK+R+ K+K+G+  ++LREI LL  L+ P+I+EL +     H  ++ LV  + E DL +++
Sbjct:   45 IGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLL 128          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKL4_MOUSE (Cyclin-dependent kinase-like 4 OS=Mus musculus GN=Cdkl4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDL 337
            ++Y K   +GEG+YGVV+K  +  +GQ VAIKK    +    V   ALREI++LK+LK P+++ LI+ F  K  +HLVFE+ +  L
Sbjct:    2 EKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQLKHPNLVNLIEVFRRKRKMHLVFEYCDHTL 87          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK9_RAT (Cell division protein kinase 9 OS=Rattus norvegicus GN=Cdk9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELID-----AFPH---KGNLHLVFEFMETDL 337
            +Y K   +G+GT+G V+KA   +TGQ VA+KK+ +  +KEG   TALREIK+L+ LK  +++ LI+     A P+   KG+++LVF+F E DL
Sbjct:   18 KYEKLAKIGQGTFGEVFKAKHRQTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDL 110          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDKC1_ORYSJ1.934e-1440.78Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDK12_CAEEL1.934e-1441.49Putative cell division protein kinase 12 OS=Caenor... [more]
CDC2H_PLAYO1.934e-1447.25Cell division control protein 2 homolog OS=Plasmod... [more]
CKB11_ARATH2.526e-1443.56Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDK5_GLOMM2.526e-1447.67Cell division protein kinase 5 homolog OS=Glossina... [more]
CDK10_RAT2.526e-1444.05Cell division protein kinase 10 OS=Rattus norvegic... [more]
CDK10_MOUSE2.526e-1444.05Cell division protein kinase 10 OS=Mus musculus GN... [more]
CDK10_HUMAN2.526e-1444.05Cell division protein kinase 10 OS=Homo sapiens GN... [more]
CDKL4_MOUSE3.300e-1444.19Cyclin-dependent kinase-like 4 OS=Mus musculus GN=... [more]
CDK9_RAT3.300e-1445.16Cell division protein kinase 9 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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