CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKL4_HUMAN (Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=CDKL4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDL 337
            ++Y K    GEG+YGVV+K  +  +GQ VA+KK    +    V   ALREI++LK+LK P+++ LI+ F  K  +HLVFE+ +  L
Sbjct:    2 EKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQLKHPNLVNLIEVFRRKRKMHLVFEYCDHTL 87          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK20_RAT (Cell division protein kinase 20 OS=Rattus norvegicus GN=Cdk20 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELK-SPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            D+Y     +GEG +G+V+KA   +TG+ VA+KK+ L + ++G+   ALREIK L+E++ S ++++L   FPH     L FEFM +DL  V+
Sbjct:    2 DQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVFPHGAGFVLAFEFMLSDLAEVV 92          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK20_MOUSE (Cell division protein kinase 20 OS=Mus musculus GN=Cdk20 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELK-SPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            D+Y     +GEG +G+V+KA   +TG+ VA+KK+ L + ++G+   ALREIK L+E++ S ++++L   FPH     L FEFM +DL  V+
Sbjct:    2 DQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVFPHGAGFVLAFEFMLSDLAEVV 92          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK16_MOUSE (Cell division protein kinase 16 OS=Mus musculus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   26 QKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++ +  +++E+   K   + Y+K + LGEGTY  VYK     T   VA+K+IRL + +EG   TA+RE+ LLK+LK  +I+ L D    + +L LVFE+++ DL+
Sbjct:  147 RRLRRVSLSEIGFGK--LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRL-EHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLK 248          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK16_HUMAN (Cell division protein kinase 16 OS=Homo sapiens GN=CDK16 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.638e-13
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   26 QKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++ +  +++E+   K   + Y+K + LGEGTY  VYK     T   VA+K+IRL + +EG   TA+RE+ LLK+LK  +I+ L D    + +L LVFE+++ DL+
Sbjct:  147 RRLRRVSLSEIGFGK--LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRL-EHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLK 248          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKL1_MOUSE (Cyclin-dependent kinase-like 1 OS=Mus musculus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFME 328
            ++Y K   +GEG+YGVV+K  +  TGQ VAIK+    +    +   ALREI++LK+LK P+++ L++ F  K  LHLVFE+ +
Sbjct:    2 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCD 84          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK20_PONAB (Cell division protein kinase 20 OS=Pongo abelii GN=CDK20 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELK-SPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            D+Y     +GEG +G+V+KA   +TG+ VA+KK+ L + ++G+   ALREIK L+E++ + ++++L   FPH     L FEFM +DL  V+
Sbjct:    2 DQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLKAVFPHSAGFVLAFEFMLSDLAEVV 92          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK20_HUMAN (Cell division protein kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELK-SPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            D+Y     +GEG +G+V+KA   +TG+ VA+KK+ L + ++G    ALREIK L+E++ + ++++L   FPH G   L FEFM +DL  V+
Sbjct:    2 DQYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGFPNQALREIKALQEMEDNQYVVQLKAVFPHGGGFVLAFEFMLSDLAEVV 92          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK17_RAT (Cell division protein kinase 17 OS=Rattus norvegicus GN=Cdk17 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   26 QKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++ +  +++E+   K   + Y+K E LGEGTY  VYK     T   VA+K+IRL + +EG   TA+RE+ LLK+LK  +I+ L D      +L LVFE+++ DL+
Sbjct:  174 RRSRRASLSEIGFGKM--ETYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLK 275          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK17_MOUSE (Cell division protein kinase 17 OS=Mus musculus GN=Cdk17 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   26 QKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++ +  +++E+   K   + Y+K E LGEGTY  VYK     T   VA+K+IRL + +EG   TA+RE+ LLK+LK  +I+ L D      +L LVFE+++ DL+
Sbjct:  174 RRSRRASLSEIGFGKM--ETYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLK 275          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDKL4_HUMAN1.638e-1343.02Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=... [more]
CDK20_RAT1.638e-1341.76Cell division protein kinase 20 OS=Rattus norvegic... [more]
CDK20_MOUSE1.638e-1341.76Cell division protein kinase 20 OS=Mus musculus GN... [more]
CDK16_MOUSE1.638e-1339.05Cell division protein kinase 16 OS=Mus musculus GN... [more]
CDK16_HUMAN1.638e-1339.05Cell division protein kinase 16 OS=Homo sapiens GN... [more]
CDKL1_MOUSE2.139e-1343.37Cyclin-dependent kinase-like 1 OS=Mus musculus GN=... [more]
CDK20_PONAB2.139e-1340.66Cell division protein kinase 20 OS=Pongo abelii GN... [more]
CDK20_HUMAN2.139e-1341.76Cell division protein kinase 20 OS=Homo sapiens GN... [more]
CDK17_RAT2.139e-1340.00Cell division protein kinase 17 OS=Rattus norvegic... [more]
CDK17_MOUSE2.139e-1340.00Cell division protein kinase 17 OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
back to top