CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + Y+K + LGEGTY  V+K     T   VA+K+IRL + +EG   TA+RE+ LLK LK  +I+ L D      +L LVFE++++DL+
Sbjct:  140 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLK 225          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + Y+K + LGEGTY  V+K     T   VA+K+IRL + +EG   TA+RE+ LLK LK  +I+ L D      +L LVFE++++DL+
Sbjct:  140 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLK 225          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: MPK12_ORYSJ (Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica GN=MPK12 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 2
Query:   35 KNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL--IDAFPHK---GNLHLVFEFMETDLETVI 349
            KN    E       A +Y  +EV+G+G+YGVV  A+DT+TG+ VAIKKI    +        LREIKLL+ L+ P I+E+  I   P +    ++++VFE ME+DL  VI
Sbjct:   70 KNTVEMEFFTEYGEASQYQIQEVIGKGSYGVVAAAVDTRTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFQDIYVVFELMESDLHQVI 179          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: ERK2_DICDI (Extracellular signal-regulated kinase 2 OS=Dictyostelium discoideum GN=erkB PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 44/104 (42.31%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   47 MAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKS-PHIIELIDAF--PHKGNLHLVFEFMETDLETVI 349
            M+  D+ K V  +Y   + +G+G YG+V+KAID KT QTVA+KKI    Q         REI  L+EL    +II+L++     +  +++LVFE METDL  VI
Sbjct:    1 MSSEDIDKHVLRKYEVLQKIGKGAYGIVWKAIDKKTKQTVALKKIFDAFQNATDAQRTFREIMFLQELHGHENIIKLLNVIKADNDRDIYLVFEHMETDLHAVI 104          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK9_XENTR (Cell division protein kinase 9 OS=Xenopus tropicalis GN=cdk9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   20 NYQKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPH------------KGNLHLVFEFMETDL 337
            NY   + P   EV   +++A        +G+GT+G V+KA   +TG+ VA+KK+ +  +KEG   TALREIK+L+ LK  +++ LI+                KG + LVF+F E DL
Sbjct:    4 NYDSVEFPYCDEVSKYERLAK-------IGQGTFGEVFKAKHRQTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKISPTANQYNRCKGTIFLVFDFCEHDL 114          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK9A_XENLA (Cell division protein kinase 9-A OS=Xenopus laevis GN=cdk9-A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 2
Query:   20 NYQKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPH------------KGNLHLVFEFMETDL 337
            NY   + P   EV   +++A        +G+GT+G V+KA   +TG+ VA+KK+ +  +KEG   TALREIK+L+ LK  +++ LI+                KG + LVF+F E DL
Sbjct:    4 NYDSVEFPYCDEVSKYERLAK-------IGQGTFGEVFKAKHRQTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKVSPTANQYNRCKGTIFLVFDFCEHDL 114          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: MPK17_ORYSJ (Mitogen-activated protein kinase 17 OS=Oryza sativa subsp. japonica GN=MPK17 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   77 ADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL--IDAFPHK---GNLHLVFEFMETDLETVI 349
            A+RY   EV+G+G+YGVV  A+DT+TG+ VAIKKI             LREIKLL+ L+ P I+E+  I   P +    +++++FE ME+DL  VI
Sbjct:  102 ANRYKVSEVIGKGSYGVVAAAVDTQTGERVAIKKINDVFDHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVIFELMESDLHQVI 197          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: MPK9_ARATH (Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   77 ADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF--PHK---GNLHLVFEFMETDLETVI 349
            A RY  +EV+G+G+YGVV  AIDT +G+ VAIKKI    +        LREIKLL+ L+ P I+E+      P +    ++++VFE ME+DL  VI
Sbjct:   20 ASRYQIQEVIGKGSYGVVASAIDTHSGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHVMLPPSRREFRDIYVVFELMESDLHQVI 115          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CTK1_YEAST (CTD kinase subunit alpha OS=Saccharomyces cerevisiae GN=CTK1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 41/120 (34.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   11 KIYNY--QKYKNPTMAEVDLSKKVADR----YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAF-PHKGNLHLVFEFMETDLETVI 349
            K YN+  Q+ ++    +V +S     R    YL+   +GEGTYG VYKA +T T + VA+KK+RL  ++EG   T++REIKLL+    P++  + +     +  ++++FE+ + DL  ++
Sbjct:  152 KYYNHKGQEGRSVIAKKVPVSVLTQQRSTSVYLRIMQVGEGTYGKVYKAKNTNTEKLVALKKLRLQGEREGFPITSIREIKLLQSFDHPNVSTIKEIMVESQKTVYMIFEYADNDLSGLL 271          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK9_CAEEL (Probable cell division protein kinase 9 OS=Caenorhabditis elegans GN=cdk-9 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 2
Query:    2 LKDKIYNYQKYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELID 280
            +K ++ NYQK  +   A     + V+  Y K   +G+GT+G V+KA    TG+ VA+KKI +  +KEG   TALRE+K+L++LK P+I +LI+
Sbjct:   60 VKQQLSNYQKLFD--QATYPFIRDVST-YEKLNKIGQGTFGEVFKARCKNTGRMVALKKILMENEKEGFPITALREVKMLEQLKHPNITDLIE 149          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDK18_PONAB4.033e-1243.68Cell division protein kinase 18 OS=Pongo abelii GN... [more]
CDK18_HUMAN4.033e-1243.68Cell division protein kinase 18 OS=Homo sapiens GN... [more]
MPK12_ORYSJ5.268e-1241.82Mitogen-activated protein kinase 12 OS=Oryza sativ... [more]
ERK2_DICDI5.268e-1242.31Extracellular signal-regulated kinase 2 OS=Dictyos... [more]
CDK9_XENTR5.268e-1236.44Cell division protein kinase 9 OS=Xenopus tropical... [more]
CDK9A_XENLA5.268e-1236.44Cell division protein kinase 9-A OS=Xenopus laevis... [more]
MPK17_ORYSJ6.880e-1244.79Mitogen-activated protein kinase 17 OS=Oryza sativ... [more]
MPK9_ARATH8.986e-1244.79Mitogen-activated protein kinase 9 OS=Arabidopsis ... [more]
CTK1_YEAST8.986e-1234.17CTD kinase subunit alpha OS=Saccharomyces cerevisi... [more]
CDK9_CAEEL8.986e-1241.94Probable cell division protein kinase 9 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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