CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_DICDI (Cell division protein kinase 7 OS=Dictyostelium discoideum GN=cdk7 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.965e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRL----GKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            D+Y    ++GEGTYGVV +A    TGQ VAIKKIR      +  +G+NF+A+REIK+L+ELK  +++ L+D F HK N++LVFE M+ DL+ VI
Sbjct:    2 DKYNIEALIGEGTYGVVSRATVKATGQIVAIKKIRKILIQNQTDDGINFSAIREIKILQELKHDNVVNLLDIFAHKSNVYLVFELMQWDLQEVI 95          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.965e-20
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA + +TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLNQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CRK1_LEIME (Cell division protein kinase 2 homolog CRK1 OS=Leishmania mexicana GN=CRK1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   74 VADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +  RY ++E +GEGTYGVVYKA DT T  TVA+K+IRL  ++EGV  TA+REI LLKEL+  +I++L+D    +  L +VFE+++ DL+
Sbjct:    1 MTSRYERQEKIGEGTYGVVYKARDTSTAATVALKRIRLDSEEEGVPCTAIREISLLKELRHENIVKLLDVCHSEHRLTIVFEYLDLDLK 89          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK7_CARAU (Cell division protein kinase 7 OS=Carassius auratus GN=cdk7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 2
Query:   68 KKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQ---KEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            K  A  Y K + LGEG +  VYKA D  T   VAIKKI++G +   K+G+N TALREIKLL+EL  P+II L+DAF HK N+ L+  FMETDLE +I
Sbjct:    6 KSRAKLYEKLDFLGEGQFATVYKARDKTTNTIVAIKKIKVGHRTEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLLC-FMETDLEVII 101          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 2
Query:   74 VADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            + D + + E +GEGTYG+VYKA    TGQ VA+KKIRL  + EGV  TA+REI LLK LK P++++L D      NL+++FE++  DL+ ++
Sbjct:    4 ILDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPSTAIREISLLKNLKHPNVVQLFDVVISGNNLYMIFEYLNMDLKKLM 95          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_BOVIN (Cell division protein kinase 2 OS=Bos taurus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFEF+  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLK 88          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDK7_DICDI8.965e-2051.06Cell division protein kinase 7 OS=Dictyostelium di... [more]
CDK2_XENLA8.965e-2054.02Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CRK1_LEIME1.171e-1951.69Cell division protein kinase 2 homolog CRK1 OS=Lei... [more]
CDK7_CARAU1.171e-1955.67Cell division protein kinase 7 OS=Carassius auratu... [more]
CDC2C_DROME1.171e-1947.83Cell division control protein 2 cognate OS=Drosoph... [more]
CDK2_RAT1.529e-1954.02Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_MOUSE1.529e-1954.02Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CDK2_HUMAN1.529e-1954.02Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDK2_CRIGR1.529e-1954.02Cell division protein kinase 2 OS=Cricetulus grise... [more]
CDK2_BOVIN1.529e-1954.02Cell division protein kinase 2 OS=Bos taurus GN=CD... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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