CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E LGEGTYG+VYKA + +TG+ VA+K+IRL  + EGV  TA+REI LLKELK P+I+ L D    +  L LVFE+++ DL+
Sbjct:    2 EKYSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKHPNIVRLHDVIHTERKLTLVFEYLDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+TVA+KKIRL  + EGV  TA+REI LLKEL  P+I++L D    +  L+LVFEF+  DL+
Sbjct:    2 ESFQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLHDVIHTENKLYLVFEFLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_RAT (Cell division control protein 2 homolog OS=Rattus norvegicus GN=Cdc2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YIKIEKIGEGTYGVVYKGRHRTTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_MOUSE (Cell division control protein 2 homolog OS=Mus musculus GN=Cdc2 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.608e-19
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y+K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YIKIEKIGEGTYGVVYKGRHRVTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_HUMAN (Cell division control protein 2 homolog OS=Homo sapiens GN=CDC2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_BOVIN (Cell division control protein 2 homolog OS=Bos taurus GN=CDC2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CRK1_SCHPO (Serine/threonine-protein kinase crk1 OS=Schizosaccharomyces pombe GN=crk1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.811e-19
Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   56 VDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            +D+ K     Y+K   +GEGTY VV+     +T + VAIKKI++G+ K+G++ +ALREIK L+E +  ++IEL+D F  K NL+++ EF+++DLE +I
Sbjct:    1 MDIEKSDKWTYVKERKVGEGTYAVVFLGRQKETNRRVAIKKIKVGQFKDGIDISALREIKFLRESRHDNVIELVDVFSTKSNLNIILEFLDSDLEMLI 98          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.811e-19
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D+Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I++L D    +  L+LVFE+++ DL+
Sbjct:    2 DQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHSNIVKLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.589e-19
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            + + K E +GEGTYGVVYKA +  TG+ VA+KKIRL  + EGV  TA+REI LLKEL  P+I++L+D    +  L+LVFE +  DL+
Sbjct:    2 ENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFELLHQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: KIN28_YEAST (Serine/threonine-protein kinase KIN28 OS=Saccharomyces cerevisiae GN=KIN28 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.912e-19
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2
Query:   71 KVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            KV   Y K + +GEGTY VVY      TG+ +AIK+I+  + K+G++ +A+RE+K L+E++ P++IELID F    NL+LV EF+ TDLE VI
Sbjct:    2 KVNMEYTKEKKVGEGTYAVVYLGCQHSTGRKIAIKEIKTSEFKDGLDMSAIREVKYLQEMQHPNVIELIDIFMAYDNLNLVLEFLPTDLEVVI 94          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDK5_DICDI1.997e-1954.02Cell division protein kinase 5 homolog OS=Dictyost... [more]
CDK2_CARAU1.997e-1955.17Cell division protein kinase 2 OS=Carassius auratu... [more]
CDC2_RAT1.997e-1955.29Cell division control protein 2 homolog OS=Rattus ... [more]
CDC2_MOUSE2.608e-1955.29Cell division control protein 2 homolog OS=Mus mus... [more]
CDC2_HUMAN3.407e-1955.29Cell division control protein 2 homolog OS=Homo sa... [more]
CDC2_BOVIN3.407e-1955.29Cell division control protein 2 homolog OS=Bos tau... [more]
CRK1_SCHPO5.811e-1943.88Serine/threonine-protein kinase crk1 OS=Schizosacc... [more]
CDKA1_ARATH5.811e-1952.87Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDK2_MESAU7.589e-1952.87Cell division protein kinase 2 OS=Mesocricetus aur... [more]
KIN28_YEAST9.912e-1948.39Serine/threonine-protein kinase KIN28 OS=Saccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
back to top