CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig808 contig Csv1_Contig808:1..349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_PONAB (Cell division control protein 2 homolog OS=Pongo abelii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.912e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y K E +GEGTYGVVYK     TGQ V +KKIRL  ++EGV  TA+REI LLKEL+ P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YTKIEKIGEGTYGVVYKGRHKTTGQVVTMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.912e-19
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D+Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  L+LVFE+++ DL+
Sbjct:    2 DQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYKA+D  T +T+A+KKIRL ++ EGV  TA+REI LLKE+   +I+ L D    +  ++LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTAIREISLLKEMNHGNIVRLHDVVHSEKRIYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.208e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   86 YLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            Y K E +GEGTYGVVYK     TGQ VA+KKIRL  ++EGV  TA+REI LLKEL  P+I+ L D       L+L+FEF+  DL+
Sbjct:    4 YTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELHHPNIVCLQDVLMQDARLYLIFEFLSMDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.208e-18
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  L+LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKARDRATNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.884e-18
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  L+LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.884e-18
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  L+LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.766e-18
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYKA D  T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  L+LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CC2H2_TRYBB (Cell division control protein 2 homolog 2 OS=Trypanosoma brucei brucei GN=CRK2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.766e-18
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            DRY + E +GEG+YG+VYK  D  TG+TVA+K+I L     GV  TA+RE+ LL+EL  P+++ L+D   H+  L L+FE+ME DL+ ++
Sbjct:   44 DRYSRIEKVGEGSYGIVYKCHDNFTGRTVAMKRIPLIVNDGGVPSTAVREVSLLRELNHPYVVRLLDVVLHEAKLLLIFEYMEQDLQGML 133          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.425e-18
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVY+A D  T +T+A+KKIRL ++ EGV  TA+REI LLKE+   +I+ L D    +  ++LVFE+++ DL+
Sbjct:    2 EQYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNIVRLHDVIHSEKRIYLVFEYLDLDLK 88          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDC2_PONAB9.912e-1954.12Cell division control protein 2 homolog OS=Pongo a... [more]
CDC2_CHERU9.912e-1952.87Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2_MAIZE1.295e-1850.57Cell division control protein 2 homolog OS=Zea may... [more]
CDC2_CHICK2.208e-1855.29Cell division control protein 2 homolog OS=Gallus ... [more]
CDC22_MEDSA2.208e-1851.72Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGAC2.884e-1851.72Cell division control protein 2 homolog OS=Vigna a... [more]
CDC2A_ANTMA2.884e-1851.72Cell division control protein 2 homolog A OS=Antir... [more]
CDC2_VIGUN3.766e-1851.72Cell division control protein 2 homolog OS=Vigna u... [more]
CC2H2_TRYBB3.766e-1847.78Cell division control protein 2 homolog 2 OS=Trypa... [more]
CDKA1_ORYSJ6.425e-1849.43Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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