CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK13_HUMAN (Cell division protein kinase 13 OS=Homo sapiens GN=CDK13 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 2
Query:   29 KYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------IDAFPHKGNLHLVFEFMETDL 337
            +Y      ++D  K+  D++    ++GEGTYG VYKA D  TG+ VA+KK+RL  +KEG   TA+REIK+L++L    II +          +D    KG  +LVFE+M+ DL
Sbjct:  686 RYGETKEKDIDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDL 798          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK13_MOUSE (Cell division protein kinase 13 OS=Mus musculus GN=Cdk13 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   53 EVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------IDAFPHKGNLHLVFEFMETDL 337
            ++D  K+  D++    ++GEGTYG VYKA D  TG+ VA+KK+RL  +KEG   TA+REIK+L++L    II +          +D    KG  +LVFE+M+ DL
Sbjct:  694 DIDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDL 798          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            ++Y   E +GEGTYGVVYKA     G+T A+KKIRL K+ EG+  TA+REI +LKELK  +I++L D    K  L LVFE ++ DL+ ++
Sbjct:    2 EKYHGLEKIGEGTYGVVYKA-QNNYGETFALKKIRLEKEDEGIPSTAIREISILKELKHSNIVKLYDVIHTKKRLILVFEHLDQDLKKLL 90          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAKH (Cell division control protein 2 homolog OS=Plasmodium knowlesi (strain H) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLETVI 349
            ++Y   E +GEGTYGVVYKA     G+T A+KKIRL K+ EG+  TA+REI +LKELK  +I++L D    K  L LVFE ++ DL+ ++
Sbjct:    2 EKYHGLEKIGEGTYGVVYKA-QNNYGETFALKKIRLEKEDEGIPSTAIREISILKELKHSNIVKLYDVIHTKKRLILVFEHLDQDLKKLL 90          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            ++Y K E +GEGTYGVVYK     T +T+A+KKIRL ++ EGV  TA+REI LLKE++  +I+ L D    +  ++LVFE+++ DL+
Sbjct:    2 EQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   29 KYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------IDAFPHKGNLHLVFEFMETDL 337
            +Y      E D  K+  D++    ++GEGTYG VYKA D  TG+ VA+KK+RL  +KEG   TA+REIK+L++L    ++ +          +D    KG  +LVFE+M+ DL
Sbjct:  704 RYGERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDL 816          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   29 KYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------IDAFPHKGNLHLVFEFMETDL 337
            +Y      E D  K+  D++    ++GEGTYG VYKA D  TG+ VA+KK+RL  +KEG   TA+REIK+L++L    ++ +          +D    KG  +LVFE+M+ DL
Sbjct:  704 RYGERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDL 816          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_CAEBR (Cell division control protein 2 homolog OS=Caenorhabditis briggsae GN=cdk-1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            D + K E +GEGTYGVVYK  + +T   VA+KKIRL  + EGV  TA+REI LLKEL+ P+++ L      +  L+L+FEF+  DL+
Sbjct:   14 DDFTKLEKIGEGTYGVVYKGRNRRTQAMVAMKKIRLESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLYLIFEFLSYDLK 100          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDC2_AJECA (Cell division control protein 2 OS=Ajellomyces capsulata GN=CDC2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAID-TKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGN-LHLVFEFMETDLE 340
            + Y K E +GEGTYGVVYKA D T   + VA+KKIRL  + EGV  TA+REI LLKE+  P+I+ L++     G+ L+LVFEF++ DL+
Sbjct:    2 ENYQKIEKIGEGTYGVVYKARDLTHPNRIVALKKIRLEAEDEGVPSTAIREISLLKEMHDPNIVRLLNIVHADGHKLYLVFEFLDLDLK 90          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.699e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   29 KYKNPTMAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------IDAFPHKGNLHLVFEFMETDL 337
            +Y      E D  K+  D++    ++GEGTYG VYKA D  TG+ VA+KK+RL  +KEG   TA+REIK+L++L    ++ +          +D    KG  +LVFE+M+ DL
Sbjct:  708 RYGERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDL 820          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDK13_HUMAN7.103e-1740.71Cell division protein kinase 13 OS=Homo sapiens GN... [more]
CDK13_MOUSE1.212e-1642.86Cell division protein kinase 13 OS=Mus musculus GN... [more]
CDC2H_PLAVI1.212e-1650.00Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAKH1.212e-1650.00Cell division control protein 2 homolog OS=Plasmod... [more]
CDKA2_ORYSJ1.582e-1648.28Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]
CDK12_RAT1.582e-1639.82Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE1.582e-1639.82Cell division protein kinase 12 OS=Mus musculus GN... [more]
CDC2_CAEBR1.582e-1649.43Cell division control protein 2 homolog OS=Caenorh... [more]
CDC2_AJECA1.582e-1652.81Cell division control protein 2 OS=Ajellomyces cap... [more]
CDK12_HUMAN2.699e-1639.82Cell division protein kinase 12 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
back to top