CF504672

Overview
NameCF504672
Unique NameCF504672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig808 contig Csv1_Contig808:1..349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK10_DICDI (Probable cyclin-dependent kinase 10 OS=Dictyostelium discoideum GN=cdk10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15
Identity = 39/89 (43.82%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   92 KREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQ-KEGVNFTALREIKLLKELKSPHIIELIDAF--PHKGNLHLVFEFMETDLETVI 349
            K + +GEGTYG+V K  D +TG+ VA+KK+++G+Q K+G+  T+LREI++LKE+K P+I+ L++         ++LVFE++E D+ ++I
Sbjct:    9 KLDSIGEGTYGIVSKGRDKETGRIVALKKVKIGQQDKDGIPLTSLREIQILKEIKHPNIVSLLEVVIGSTGDKIYLVFEYLEHDVASLI 97          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: MK15_MOUSE (Mitogen-activated protein kinase 15 OS=Mus musculus GN=Mapk15 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 2
Query:   47 MAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKS-PHIIELIDAFPHKG--NLHLVFEFMETDLETVI 349
            M   ++ + VA RYL +  LG+G YG+V+KA+D +TG+ VAIKKI    + +       REI LLKE    P+II L+D  P K   +++LVFE M+TDL  VI
Sbjct:    1 MCAAEVDRHVAQRYLIKRRLGKGAYGIVWKAMDRRTGEVVAIKKIFDAFRDQIDAQRTFREIMLLKEFGGHPNIIRLLDVIPAKNDRDIYLVFESMDTDLNAVI 104          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_RAT (Cell division protein kinase 5 OS=Rattus norvegicus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +Y K E +GEGTYG V+KA + +T + VA+K++RL    EGV  +ALREI LLKELK  +I+ L D       L LVFEF + DL+
Sbjct:    3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +Y K E +GEGTYG V+KA + +T + VA+K++RL    EGV  +ALREI LLKELK  +I+ L D       L LVFEF + DL+
Sbjct:    3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +Y K E +GEGTYG V+KA + +T + VA+K++RL    EGV  +ALREI LLKELK  +I+ L D       L LVFEF + DL+
Sbjct:    3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.898e-15
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   83 RYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIELIDAFPHKGNLHLVFEFMETDLE 340
            +Y K E +GEGTYG V+KA + +T + VA+K++RL    EGV  +ALREI LLKELK  +I+ L D       L LVFEF + DL+
Sbjct:    3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLK 88          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 2
Query:   71 KVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKEL-KSPHIIELIDAFPHKGN-----LHLVFEFMETDLETVI 349
            +  D Y K E +GEGTYG VYKA +  TG+ VA+KK RL +  EGV  TALRE+ LL+ L +  H++ L+D    +       L+LVFE+M+TDL+  I
Sbjct:   23 RAMDLYEKLEKVGEGTYGKVYKAREKATGRIVALKKTRLPEDDEGVPPTALREVSLLRMLSQDSHVVRLLDLKQGQNKEGQTILYLVFEYMDTDLKKFI 121          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   47 MAEVDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKEL-KSPHIIELID-----AFPHKGNLHLVFEFMETDLETVI 349
            M E  ++    D + K E +GEGTYG VY+A +  TG+ VA+KK RL + +EGV  T LREI +L+ L + PH++ L+D     +   K  L+LVFE+M+TD++  I
Sbjct:    1 MDEGVIAVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPSTTLREISILRMLARDPHVVRLMDVKQGLSKEGKTVLYLVFEYMDTDVKKFI 107          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL-----------------IDAFPHKGNLHLVFEFMETDL 337
            D + K E +GEGTYG VY A +T+T + VA+KKIR+  ++EG   TA+REIK+LK+L   ++I+L                 I+   +KG++++VFE+M+ DL
Sbjct:   23 DCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDL 125          
BLAST of CF504672 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.648e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   80 DRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKSPHIIEL----------------IDAFPHKGNLHLVFEFMETDL 337
            D + K E +GEGTYG VY A + KTG+ VA+KKIR+  ++EG   TA+REIK+LK+L   ++I+L                 D   +KG +++VFE+M+ DL
Sbjct:   24 DCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIQLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDL 125          
The following BLAST results are available for this feature:
BLAST of CF504672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CDK10_DICDI2.285e-1543.82Probable cyclin-dependent kinase 10 OS=Dictyosteli... [more]
MK15_MOUSE3.898e-1545.19Mitogen-activated protein kinase 15 OS=Mus musculu... [more]
CDK5_RAT3.898e-1550.00Cell division protein kinase 5 OS=Rattus norvegicu... [more]
CDK5_MOUSE3.898e-1550.00Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN3.898e-1550.00Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN3.898e-1550.00Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
CKB21_ORYSJ5.091e-1546.46Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CKB21_ARATH5.091e-1542.99Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CDKC2_ORYSJ5.091e-1540.78Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKC1_ARATH6.648e-1542.16Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504672 ID=CF504672; Name=CF504672; organism=Citrus sinensis; type=EST; length=349bp
CCTAAAAGATAAAATATACAATTACCAGAAATATAAAAATCCGACGATGG
CAGAAGTCGATTTGTCGAAGAAAGTCGCTGATAGATACCTGAAACGTGAG
GTTCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACTAA
GACAGGACAGACTGTTGCTATAAAAAAAATTCGGCTTGGGAAGCAAAAGG
AGGGGGTGAATTTTACAGCACTAAGAGAAATAAAGCTGCTGAAAGAACTT
AAAAGTCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGGGAA
CTTGCATCTTGTTTTTGAGTTTATGGAGACTGACCTCGAAACGGTTATT
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