CF504674

Overview
NameCF504674
Unique NameCF504674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length330
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ  +YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ  +YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.909e-30
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ  +YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.256e-30
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.256e-30
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
[Close]
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.256e-30
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294
The following BLAST results are available for this feature:
BLAST of CF504674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
SC61A_PAGBO1.909e-3064.36Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN1.909e-3064.36Protein transport protein Sec61 subunit alpha OS=N... [more]
SC61A_HARAN1.909e-3064.36Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DISMA1.909e-3064.36Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_MOUSE1.909e-3064.36Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN1.909e-3064.36Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN1.909e-3064.36Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_GADOC3.256e-3063.37Protein transport protein Sec61 subunit alpha OS=G... [more]
SC61A_BORSA3.256e-3063.37Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A1_ONCMY3.256e-3063.37Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-163 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504674 ID=CF504674; Name=CF504674; organism=Citrus sinensis; type=EST; length=330bp
TAACATTTGTGAAAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAA
ACAGTGGCCGGGGAGCCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCA
TCTGCTGATAACCAAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCT
ATCGGCAAAACCTTCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTA
TTCCTTATTGTTGTCTACTTTCAAGGGTTCAAAGTGGTGTTGCCCGTGAG
ATCAAAAAATGGCTGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCT
ACACATCCAACATGCCTATCATTCTCCAAT
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