CF504674

Overview
NameCF504674
Unique NameCF504674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length330
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.256e-30
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.252e-30
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NLLATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLLATVFVFGVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.252e-30
Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.473e-30
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   27 KLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            K  +P         EFEGA+IALFHLL T+ +KV ALRE FYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S    GQ   YPIKLFYTSN+PIILQ
Sbjct:  194 KAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREGFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQ 294          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.110e-29
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 3
Query:   12 KALFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGA-YPIKLFYTSNMPIILQ 329
            +++  K  +P         EFEGA++ALF L+ITK +KV AL+EAFYRQNLPN+TNLLATVLVF++VVYFQGF+V LP+      G  G  YPIKLFYTSNMPIILQ
Sbjct:  193 ESIVWKSFSPTTINTGRGTEFEGALVALFQLMITKTDKVRALQEAFYRQNLPNVTNLLATVLVFVLVVYFQGFQVELPITPAKSKGMAGQFYPIKLFYTSNMPIILQ 299          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.110e-29
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 3
Query:   12 KALFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            +++  K  +P        PE+EGAVIALFHLL+T  NK  AL EAFYRQNLPNI NLLAT++VF  V+Y QGF+V +PV+S    G +G+YPI+LFYTSNMPI+LQ
Sbjct:  191 ESIMWKAFSPTSINTGRGPEYEGAVIALFHLLMTWDNKQRALYEAFYRQNLPNIMNLLATLVVFAAVIYLQGFRVEIPVKSSRQRGARGSYPIRLFYTSNMPIMLQ 296          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.975e-27
Identity = 63/104 (60.58%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   18 LFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            +F K  AP         EFEGAV+ALFHLL  +++K  AL EAFYRQNLPNI  LLAT +VF +VVY QGF+  +PVRS    GQ G YPIKLFYTSN PI+LQ
Sbjct:  193 IFWKAFAPTTVNNGRGDEFEGAVVALFHLLSVRKDKRRALVEAFYRQNLPNIFQLLATFIVFFLVVYLQGFRYEIPVRSTRQRGQNGLYPIKLFYTSNTPIMLQ 296          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.672e-26
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3
Query:   18 LFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            +F K  AP    +    EFEGAV+ALFHLL ++++K  AL EAFYR +LPN+  L+ATV VFL+VVY QGF++ LP++S    G  G YPI+LFYTSN+PI+LQ
Sbjct:  193 VFWKAFAPTTSNIGKGTEFEGAVVALFHLLGSRKDKKRALLEAFYRSHLPNMFQLIATVFVFLLVVYLQGFRIELPIKSTRQRGPYGLYPIRLFYTSNIPIMLQ 296          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.416e-25
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 3
Query:   18 LFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            +F K  AP   T A   EF+GAV+A+FHLL ++++K  AL E+FYR NLPN+  LLAT+LVF  VVY QGF++ LP++S    G  G+YPI+LFYTSN+PI+L+
Sbjct:  193 VFWKAFAPTTSTSAKGTEFDGAVVAMFHLLGSRKDKKRALIESFYRPNLPNMFQLLATLLVFFAVVYLQGFRIELPMKSTRQRGPYGSYPIRLFYTSNIPIMLE 296          
BLAST of CF504674 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.849e-25
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 3
Query:   18 LFGKLLAPQP*TVAGEPEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNGCGQQGAYPIKLFYTSNMPIILQ 329
            +F K  AP         EFEGAVIA FHLL  +++K  AL EAFYR+NLPN+  ++ATV VFL V+Y QGF+  LPV+S    GQ   YPIKLFYTSN PI+LQ
Sbjct:  192 IFWKAFAPTTVNSGRGKEFEGAVIAFFHLLAVRKDKKRALVEAFYRENLPNMFQVIATVFVFLFVLYLQGFRYELPVKSTKVRGQMAIYPIKLFYTSNTPIMLQ 295          
The following BLAST results are available for this feature:
BLAST of CF504674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
S61A1_DANRE3.256e-3063.37Protein transport protein Sec61 subunit alpha-like... [more]
S61A2_ONCMY4.252e-3064.36Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_DANRE4.252e-3062.38Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_HEMAM9.473e-3062.38Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_PYRSA2.110e-2961.68Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NEUCR2.110e-2959.43Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_HANAN1.975e-2760.58Protein transport protein SEC61 subunit alpha OS=H... [more]
SC61A_DEBHA1.672e-2655.77Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_CANAL1.416e-2554.81Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_CANGA1.849e-2556.73Protein transport protein SEC61 subunit alpha OS=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-163 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504674 ID=CF504674; Name=CF504674; organism=Citrus sinensis; type=EST; length=330bp
TAACATTTGTGAAAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAA
ACAGTGGCCGGGGAGCCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCA
TCTGCTGATAACCAAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCT
ATCGGCAAAACCTTCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTA
TTCCTTATTGTTGTCTACTTTCAAGGGTTCAAAGTGGTGTTGCCCGTGAG
ATCAAAAAATGGCTGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCT
ACACATCCAACATGCCTATCATTCTCCAAT
back to top