CF504684

Overview
NameCF504684
Unique NameCF504684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504684 vs. ExPASy Swiss-Prot
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.804e-11
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  171 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS 272
            R+C HC    TPQWR GP+GPKTLCNACGVR+KS
Sbjct:  180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKS 213
The following BLAST results are available for this feature:
BLAST of CF504684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GATA3_ARATH9.804e-1173.53GATA transcription factor 3 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-173 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504684 ID=CF504684; Name=CF504684; organism=Citrus sinensis; type=EST; length=273bp
GCTTAATTGCCCCCAAGGCCTCATCTGATTCTGAGAATTTTGCAGAGTCT
CGCCTTGTGATTAAAATACCAAAGCAATTCAACCCGGAGCACAAGAAGAA
AAAGAAAATCAAATTGTCAGTTCCAAAAGTTTCCGATGAGACTAGTGAAG
TTGGGCCAACACAAGCCGTTAGGAAATGCATGCATTGCGAGATAACGAAG
ACGCCTCAATGGAGAGCAGGGCCAATGGGGCCAAAAACCCTTTGCAATGC
ATGCGGTGTTCGCTATAAGTCTT
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