CF504694

Overview
NameCF504694
Unique NameCF504694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.242e-18
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            Y + WR D EGLP DLIRRG+AVEDP  PHGL+L IEDYPYA DGL LW A+ +W   YV
Sbjct:  631 YRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYV 690          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.065e-17
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHLLSR 202
            K+W F ++ LP DLI+RG+A++DP APHGL+L IEDYPYA DGL++W A+K WV  YV+   +R
Sbjct:  600 KNWVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYAR 663          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.065e-17
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNH 190
            YD+ WRFD E LP+DLIRRG+AV +P     L+L IEDYPYANDGL +WDA+KQW   YV H
Sbjct:  659 YDQQWRFDMEALPEDLIRRGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQH 718          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.391e-17
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K W F ++ LP DLI+RG+A+EDP  PHG++L IEDYPYA DGL++WDA+K WV  YV
Sbjct:  591 KDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYV 648          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.391e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 2
Query:    2 IYDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            IY  HW F ++ LP +L +RG+AVEDP+APHGL+L I+DYPYA DGL++W A++ WV +Y+
Sbjct:  590 IYKNHWTFPDQALPAELKKRGMAVEDPEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYI 650          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.372e-17
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAV--EDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNH 190
            YDK WRFD E LP+DLIRRG+AV  ED K    L+L IEDYPYANDGL +WDA+KQW ++YV H
Sbjct:  660 YDKQWRFDMEALPEDLIRRGMAVRGEDGK----LELAIEDYPYANDGLLVWDAIKQWASDYVAH 719          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.013e-17
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K+W F ++ LP DLI+RG+A++DP  PHG++L IEDYPYA DGL++W A+K WV  YV
Sbjct:  572 KNWVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYV 629          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.013e-17
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNY 181
            K W F ++ LP DL++RG+AVED  +PHG++L IEDYPYA DGL++W A+K WVT+Y
Sbjct:  595 KDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDY 651          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.177e-16
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K W F ++ LP DLI+RG+AVEDP +P+GL+L +EDYPYA DGL++WD ++ WV +YV+
Sbjct:  595 KSWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVS 653          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.537e-16
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHLLSRSK 208
            K+W F  + LPKDL++RG+AVEDP + +G+KL IEDYP+A DGL++W A+K WVT Y     +  K
Sbjct:  615 KNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDK 680          
The following BLAST results are available for this feature:
BLAST of CF504694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX5_ORYSJ6.242e-1866.67Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX2_SOYBN1.065e-1757.81Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX21_HORVU1.065e-1764.52Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX3_SOYBN1.391e-1762.07Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_ARATH1.391e-1757.38Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX22_HORVU2.372e-1767.19Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOYBN9.013e-1758.62Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_SOLTU9.013e-1759.65Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXA_PHAVU1.177e-1657.63Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX5_ARATH1.537e-1653.03Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-184 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504694 ID=CF504694; Name=CF504694; organism=Citrus sinensis; type=EST; length=217bp
CATCTATGACAAGCACTGGAGGTTTGACAATGAAGGACTCCCCAAGGACC
TTATTAGGAGGGGAATAGCTGTTGAAGATCCAAAAGCTCCTCATGGCCTT
AAGCTAAACATCGAAGACTACCCATATGCCAACGATGGGCTCGATCTCTG
GGATGCCTTAAAACAATGGGTTACTAACTATGTGAACCACCTATTATCCC
GATCCAAGCCTTGTAGA
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