CF504694

Overview
NameCF504694
Unique NameCF504694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.008e-16
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNY 181
            K W F ++ LP DL++RG+AVED  +PHG++L I+DYPYA DGL++W A+K WVT+Y
Sbjct:  594 KDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDY 650          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.622e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNY 181
            K+W F  +GLP DLI+RGIA++DP +P  +KL I+DYPYA DGL +W A++QWVT Y
Sbjct:  591 KNWNFTEQGLPDDLIKRGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEY 647          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.473e-16
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    5 YDKHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVNHLLSRSK 208
            Y   WRFD EGLP DL+RRG+A ED  A  G++L I+DYPYA DGL +W A+K  V +YV H  S SK
Sbjct:  647 YKSMWRFDMEGLPADLVRRGMAEEDSSAECGVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSK 714          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.700e-15
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K+W F  + LP DLI+RG+A+EDP +P G+KL +EDYPYA DGL++W  +K WV +YV+
Sbjct:  595 KNWVFTEQALPADLIKRGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVS 653          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.220e-15
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K W F ++ LP DL++RG+AV DP +P+ ++L IEDYPYANDGL +W A++QW T Y+
Sbjct:  598 KDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYL 655          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.899e-15
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYVN 187
            K+W F ++ LP DLI+R +AV+D  +P+GL+L IEDYPYA DGL++W A+K WV +YV+
Sbjct:  598 KYWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVS 656          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.787e-15
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNY 181
            K W F  + LP DL++RG+AVED  +PHG++L I DYPYA DGL++W A+K WVT Y
Sbjct:  593 KDWVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEY 649          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.787e-15
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K+W F  +GLP DLI+RG+AVED  +P+ ++L I+DYPYA DGL++W A++QWV  Y+
Sbjct:  594 KNWNFTEQGLPADLIKRGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYL 651          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.439e-14
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K W+F  +GLP DLI+RG+AVEDP +P+ ++L + DYPYA DGL +W A++Q+V+ Y+
Sbjct:  590 KDWKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYL 647          
BLAST of CF504694 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.078e-13
Identity = 29/58 (50.00%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   11 KHWRFDNEGLPKDLIRRGIAVEDPKAPHGLKLNIEDYPYANDGLDLWDALKQWVTNYV 184
            K+W+F  + LP DL++RG+AV DP +P+ ++L I+DYPYA DGL +W A+++WV  Y+
Sbjct:  601 KNWKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYL 658          
The following BLAST results are available for this feature:
BLAST of CF504694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXA_SOLLC2.008e-1657.89Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_ORYSJ2.622e-1659.65Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX6_ARATH4.473e-1657.35Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_PEA1.700e-1555.93Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_ORYSJ2.220e-1555.17Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX2_PEA2.899e-1555.93Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXB_SOLLC3.787e-1557.89Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX3_ORYSJ3.787e-1555.17Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_HORVU1.439e-1453.45Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX4_ORYSJ2.078e-1350.00Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-184 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504694 ID=CF504694; Name=CF504694; organism=Citrus sinensis; type=EST; length=217bp
CATCTATGACAAGCACTGGAGGTTTGACAATGAAGGACTCCCCAAGGACC
TTATTAGGAGGGGAATAGCTGTTGAAGATCCAAAAGCTCCTCATGGCCTT
AAGCTAAACATCGAAGACTACCCATATGCCAACGATGGGCTCGATCTCTG
GGATGCCTTAAAACAATGGGTTACTAACTATGTGAACCACCTATTATCCC
GATCCAAGCCTTGTAGA
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